Difference between revisions of "TSS:Hg 243122.1"
From referenceTSS
| Line 12: | Line 12: | ||
|TRPM-2= | |TRPM-2= | ||
|TRPM2= | |TRPM2= | ||
| + | |all_trans=ENST00000420366.5:23 NM_001142533:23 AK056068:23 NM_001142534:45 ENST00000629203.2:53 AK291393:53 ENST00000414380.1:297 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=23 |
| − | |distance_to_tss= | + | |distance_to_tss=25 |
|end=27614679 | |end=27614679 | ||
|end_of_center_position=127755327 | |end_of_center_position=127755327 | ||
|entrez_id=1191 | |entrez_id=1191 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=AAG4 | + | |gene_alias=AAG4{{!}}APO-J{{!}}APOJ{{!}}CLI{{!}}CLU1{{!}}CLU2{{!}}KUB1{{!}}NA1/NA2{{!}}SGP-2{{!}}SGP2{{!}}SP-40{{!}}TRPM-2{{!}}TRPM2 |
|gene_description=clusterin | |gene_description=clusterin | ||
| − | |gene_name= | + | |gene_id=10044 |
| + | |gene_name=SH2 domain containing 3C | ||
| + | |gene_source=HGNC:16884 | ||
| + | |gene_symbol=SH2D3C | ||
| + | |gene_synonyms=NSP3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16884 | ||
|nearest_ensembl=ENSG00000120885 | |nearest_ensembl=ENSG00000120885 | ||
|nearest_promoter_id=NM_001831 | |nearest_promoter_id=NM_001831 | ||
|nearest_refseq=NM_001831 | |nearest_refseq=NM_001831 | ||
|nearest_unigene=Hs.436657 | |nearest_unigene=Hs.436657 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=27614671 | |start=27614671 | ||
|start_of_center_position=127755326 | |start_of_center_position=127755326 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=48(GTATTTATAGCG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000420366.5 NM_001142533 AK056068 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243122.1 | |tss_id=hg_243122.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q8N5H7 | ||
}} | }} | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127755326 |
|---|---|
| End of the center position in the TSS region: | 127755327 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000420366.5 NM_001142533 AK056068 |
|---|---|
| Distance: | 23 |
| Num_trans: | 7 |
| All_trans: | ENST00000420366.5:23 NM_001142533:23 AK056068:23 NM_001142534:45 ENST00000629203.2:53 AK291393:53 ENST00000414380.1:297 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001831 |
| Entrez ID: | 1191 |
| Nearest Unigene: | Hs.436657 |
| Nearest Refseq: | NM_001831 |
| Nearest Ensembl: | ENSG00000120885 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 |
| Gene Description: | clusterin |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 48(GTATTTATAGCG,+,0.00) |
