Difference between revisions of "TSS:Hg 102678.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NP94= | |NP94= | ||
|ZNF356= | |ZNF356= | ||
| − | |all_trans=ENST00000538431.5 | + | |all_trans=ENST00000538431.5:-50 ENST00000324544.6:80 NM_001257975:-215 AK296363:-215 ENST00000357558.9:268 AK292713:277 AK316393:277 ENST00000372938.10:285 ENST00000629610.2:285 NM_001131018:285 NM_001131017:285 NM_001257976:285 NM_001131016:285 AK303288:285 AK303636:285 AK027287:285 ENST00000372954.5:289 BC021163:289 ENST00000467178.5:300 ENST00000476727.6:307 AB030835:311 ENST00000488559.6:369 ENST00000420484.2:405 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 11: | Line 11: | ||
|entrez_id=25792 | |entrez_id=25792 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=LSFR1 | + | |gene_alias=LSFR1{{!}}NP94{{!}}ZNF356 |
|gene_description=CDKN1A interacting zinc finger protein 1 | |gene_description=CDKN1A interacting zinc finger protein 1 | ||
|gene_id=25792 | |gene_id=25792 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_012127 | |nearest_refseq=NM_012127 | ||
|nearest_unigene=Hs.212395 | |nearest_unigene=Hs.212395 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=128191856 | |start=128191856 | ||
|start_of_center_position=128191872 | |start_of_center_position=128191872 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000538431.5 | + | |transcript_name=ENST00000538431.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102678.1 | |tss_id=hg_102678.1 | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128191872 |
|---|---|
| End of the center position in the TSS region: | 128191873 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000538431.5 |
|---|---|
| Distance: | -50 |
| Num_trans: | 23 |
| All_trans: | ENST00000538431.5:-50 ENST00000324544.6:80 NM_001257975:-215 AK296363:-215 ENST00000357558.9:268 AK292713:277 AK316393:277 ENST00000372938.10:285 ENST00000629610.2:285 NM_001131018:285 NM_001131017:285 NM_001257976:285 NM_001131016:285 AK303288:285 AK303636:285 AK027287:285 ENST00000372954.5:289 BC021163:289 ENST00000467178.5:300 ENST00000476727.6:307 AB030835:311 ENST00000488559.6:369 ENST00000420484.2:405 |
TATA-Box annotation
| Distance to TSS: | 231 |
|---|---|
| Nearest PromoterID: | NM_001257975 |
| Entrez ID: | 25792 |
| Nearest Unigene: | Hs.212395 |
| Nearest Refseq: | NM_012127 |
| Nearest Ensembl: | ENSG00000148337 |
| Gene Name: | CDKN1A interacting zinc finger protein 1 |
| Gene Alias: | LSFR1|NP94|ZNF356 |
| Gene Description: | CDKN1A interacting zinc finger protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
