Difference between revisions of "TSS:Hg 243151.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_005312:-4 ENST00000372189.7:-95 D21239:-95 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-4 |
| − | |distance_to_tss= | + | |distance_to_tss=2751 |
|end=38148203 | |end=38148203 | ||
|end_of_center_position=131737443 | |end_of_center_position=131737443 | ||
| Line 10: | Line 11: | ||
|gene_alias=STARD1 | |gene_alias=STARD1 | ||
|gene_description=steroidogenic acute regulatory protein | |gene_description=steroidogenic acute regulatory protein | ||
| − | |gene_name= | + | |gene_id=2889 |
| + | |gene_name=Rap guanine nucleotide exchange factor 1 | ||
| + | |gene_source=HGNC:4568 | ||
| + | |gene_symbol=RAPGEF1 | ||
| + | |gene_synonyms=C3G | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4568 | ||
|nearest_ensembl=ENSG00000147465 | |nearest_ensembl=ENSG00000147465 | ||
|nearest_promoter_id=NM_000349 | |nearest_promoter_id=NM_000349 | ||
|nearest_refseq=NM_000349 | |nearest_refseq=NM_000349 | ||
|nearest_unigene=Hs.521535 | |nearest_unigene=Hs.521535 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=38148199 | |start=38148199 | ||
|start_of_center_position=131737442 | |start_of_center_position=131737442 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_005312 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243151.1 | |tss_id=hg_243151.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q13905 | ||
}} | }} | ||
Revision as of 16:32, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 131737442 |
|---|---|
| End of the center position in the TSS region: | 131737443 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_005312 |
|---|---|
| Distance: | -4 |
| Num_trans: | 3 |
| All_trans: | NM_005312:-4 ENST00000372189.7:-95 D21239:-95 |
TATA-Box annotation
| Distance to TSS: | 2751 |
|---|---|
| Nearest PromoterID: | NM_000349 |
| Entrez ID: | 6770 |
| Nearest Unigene: | Hs.521535 |
| Nearest Refseq: | NM_000349 |
| Nearest Ensembl: | ENSG00000147465 |
| Gene Name: | Rap guanine nucleotide exchange factor 1 |
| Gene Alias: | STARD1 |
| Gene Description: | steroidogenic acute regulatory protein |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
