Difference between revisions of "Template:PeakPage"
From referenceTSS
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table { | table { | ||
border-collapse:collapse; | border-collapse:collapse; | ||
| − | width: 400px; | + | /* width: 400px; */ |
} | } | ||
tr{ | tr{ | ||
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border-bottom-width: thin; | border-bottom-width: thin; | ||
} | } | ||
| + | .section_head{ | ||
| + | font-weight: bold; | ||
| + | font-size: 16px; | ||
| + | font-style:; | ||
| + | } | ||
</style> | </style> | ||
</html> | </html> | ||
| − | < | + | <span class="section_head">Basic information about the peak</span> |
| − | <tr><th scope="row" | + | <hr width="500px" size="2" noshade> |
| + | <table> | ||
| + | <tr><th scope="row" style="text-align:left;width:100px">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr> | ||
<tr><th scope="row" align="left">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr> | <tr><th scope="row" align="left">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr> | ||
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr> | <tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr> | ||
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<tr><th scope="row" align="left">End:</th><td>[[end::{{{end}}}]]</td></tr> | <tr><th scope="row" align="left">End:</th><td>[[end::{{{end}}}]]</td></tr> | ||
<tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr> | <tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr> | ||
| + | </table> | ||
| + | <br/> | ||
| + | <br/> | ||
| + | <span class="section_head">TATA-Box annotation</span> | ||
| + | <hr width="500px" size="2" noshade> | ||
| + | <table border="0" > | ||
<tr><th scope="row" align="left">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr> | <tr><th scope="row" align="left">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr> | ||
<tr><th scope="row" align="left">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr> | <tr><th scope="row" align="left">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr> | ||
| Line 33: | Line 46: | ||
<tr><th scope="row" align="left">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr> | <tr><th scope="row" align="left">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr> | ||
<tr><th scope="row" align="left">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr> | <tr><th scope="row" align="left">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr> | ||
| + | </table> | ||
| + | <br/> | ||
| + | <br/> | ||
| + | <span class="section_head">Transcript annotation</span> | ||
| + | <hr width="500px" size="2" noshade> | ||
| + | <table border="0" > | ||
<tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr> | <tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr> | ||
<tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr> | <tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr> | ||
<tr><th scope="row" align="left">Num_trans:</th><td>[[num_trans::{{{num_trans}}}]]</td></tr> | <tr><th scope="row" align="left">Num_trans:</th><td>[[num_trans::{{{num_trans}}}]]</td></tr> | ||
<tr><th scope="row" align="left">All_trans:</th><td>[[all_trans::{{{all_trans}}}]]</td></tr> | <tr><th scope="row" align="left">All_trans:</th><td>[[all_trans::{{{all_trans}}}]]</td></tr> | ||
| + | </table> | ||
| + | <br/> | ||
| + | <br/> | ||
| + | <span class="section_head">Gene and protein annotation</span> | ||
| + | <hr width="500px" size="2" noshade> | ||
| + | <table border="0" > | ||
| + | <tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr> | ||
| + | <tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr> | ||
<tr><th scope="row" align="left">GeneID:</th><td>[[gene_id::{{{gene_id}}}]]</td></tr> | <tr><th scope="row" align="left">GeneID:</th><td>[[gene_id::{{{gene_id}}}]]</td></tr> | ||
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>[[hgnc_mgi_id::{{{hgnc_mgi_id}}}]]</td></tr> | <tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>[[hgnc_mgi_id::{{{hgnc_mgi_id}}}]]</td></tr> | ||
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<tr><th scope="row" align="left">Gene_synonyms:</th><td>[[gene_synonyms::{{{gene_synonyms}}}]]</td></tr> | <tr><th scope="row" align="left">Gene_synonyms:</th><td>[[gene_synonyms::{{{gene_synonyms}}}]]</td></tr> | ||
<tr><th scope="row" align="left">Gene_source:</th><td>[[gene_source::{{{gene_source}}}]]</td></tr> | <tr><th scope="row" align="left">Gene_source:</th><td>[[gene_source::{{{gene_source}}}]]</td></tr> | ||
| + | </table> | ||
| + | <br/> | ||
| + | <br/> | ||
| + | <span class="section_head">TSS classification</span> | ||
| + | <hr width="500px" size="2" noshade> | ||
| + | <table border="0" > | ||
| + | <tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr> | ||
| + | <tr><th scope="row" align="left">Start:</th><td>[[start::{{{start}}}]]</td></tr> | ||
| + | <tr><th scope="row" align="left">End:</th><td>[[end::{{{end}}}]]</td></tr> | ||
| + | <tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr> | ||
</table> | </table> | ||
<!-- | <!-- | ||
Revision as of 16:46, 7 February 2018
Basic information about the peak
| PeakID: | {{{peak_id}}} |
|---|---|
| Species: | {{{species}}} |
| Chr: | {{{chr}}} |
| Start: | {{{start}}} |
| End: | {{{end}}} |
| Strand: | {{{strand}}} |
TATA-Box annotation
| Peak Score: | {{{peak_score}}} |
|---|---|
| Distance to TSS: | {{{distance_to_tss}}} |
| Nearest PromoterID: | {{{nearest_promoter_id}}} |
| Entrez ID: | {{{entrez_id}}} |
| Nearest Unigene: | {{{nearest_unigene}}} |
| Nearest Refseq: | {{{nearest_refseq}}} |
| Nearest Ensembl: | {{{nearest_ensembl}}} |
| Gene Name: | {{{gene_name}}} |
| Gene Alias: | {{{gene_alias}}} |
| Gene Description: | {{{gene_description}}} |
| Gene Type: | {{{gene_type}}} |
| CpG%: | {{{cpg_percent}}} |
| GC%: | {{{gc_percent}}} |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | {{{tata_box}}} |
Transcript annotation
| Transcript_name: | {{{transcript_name}}} |
|---|---|
| Distance: | {{{distance}}} |
| Num_trans: | {{{num_trans}}} |
| All_trans: | {{{all_trans}}} |
Gene and protein annotation
| Transcript_name: | {{{transcript_name}}} |
|---|---|
| Distance: | {{{distance}}} |
| GeneID: | {{{gene_id}}} |
| HGNC/MGI_ID: | {{{hgnc_mgi_id}}} |
| UniProt_ID: | {{{uniprot_id}}} |
| Gene_name: | {{{gene_name}}} |
| Gene_symbol: | {{{gene_symbol}}} |
| Gene_synonyms: | {{{gene_synonyms}}} |
| Gene_source: | {{{gene_source}}} |
TSS classification
| Chr: | {{{chr}}} |
|---|---|
| Start: | {{{start}}} |
| End: | {{{end}}} |
| Strand: | {{{strand}}} |
