Difference between revisions of "TSS:Hg 102945.1"
From referenceTSS
| Line 2: | Line 2: | ||
|RGF= | |RGF= | ||
|RalGEF= | |RalGEF= | ||
| − | |all_trans=NM_006266: | + | |all_trans=ENST00000372050.8:16 NM_006266:16 NM_001271776:16 BC059362:17 ENST00000372047.7:80 AF295773:91 ENST00000493438.5:100 AK074114:100 GQ129266:100 GQ129265:100 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| − | |distance= | + | |distance=16 |
| − | |distance_to_tss=- | + | |distance_to_tss=-25 |
|end=133121275 | |end=133121275 | ||
|end_of_center_position=133121266 | |end_of_center_position=133121266 | ||
|entrez_id=5900 | |entrez_id=5900 | ||
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
| − | |gene_alias=RGDS | + | |gene_alias=RGDS{{!}}RGF{{!}}RalGEF |
|gene_description=ral guanine nucleotide dissociation stimulator | |gene_description=ral guanine nucleotide dissociation stimulator | ||
|gene_id=5900 | |gene_id=5900 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:9842 | |hgnc_mgi_id=HGNC:9842 | ||
|nearest_ensembl=ENSG00000160271 | |nearest_ensembl=ENSG00000160271 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006266 |
|nearest_refseq=NM_006266 | |nearest_refseq=NM_006266 | ||
|nearest_unigene=Hs.106185 | |nearest_unigene=Hs.106185 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=133121255 | |start=133121255 | ||
|start_of_center_position=133121265 | |start_of_center_position=133121265 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_006266 NM_001271776 | + | |transcript_name=ENST00000372050.8 NM_006266 NM_001271776 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102945.1 | |tss_id=hg_102945.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8N4Y1 | + | |uniprot_id=Q12967 Q8N4Y1 |
}} | }} | ||
Revision as of 17:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133121265 |
|---|---|
| End of the center position in the TSS region: | 133121266 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372050.8 NM_006266 NM_001271776 |
|---|---|
| Distance: | 16 |
| Num_trans: | 10 |
| All_trans: | ENST00000372050.8:16 NM_006266:16 NM_001271776:16 BC059362:17 ENST00000372047.7:80 AF295773:91 ENST00000493438.5:100 AK074114:100 GQ129266:100 GQ129265:100 |
TATA-Box annotation
| Distance to TSS: | -25 |
|---|---|
| Nearest PromoterID: | NM_006266 |
| Entrez ID: | 5900 |
| Nearest Unigene: | Hs.106185 |
| Nearest Refseq: | NM_006266 |
| Nearest Ensembl: | ENSG00000160271 |
| Gene Name: | ral guanine nucleotide dissociation stimulator |
| Gene Alias: | RGDS|RGF|RalGEF |
| Gene Description: | ral guanine nucleotide dissociation stimulator |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
