Difference between revisions of "TSS:Hg 102998.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000485435.6:0 AK315488:-13 AK295435:23 ENST00000371989.8:26 NM_001280789:26 NM_033161:26 AK299656:26 AK303309:26 AK316480:26 AK300004:27 AF078866:28 AF078867:28 ENST00000371991.3:43 BC111023:55 ENST00000545297.5:-61 ENST00000613129.4:-61 ENST00000618229.4:-61 NM_001280792:-61 NM_001280791:-61 NM_001280793:-61 NM_001280790:-61 BX647961:67 ENST00000371982.3:76 AK293434:86 ENST00000467910.5:95 BC018741:97 AB528538:112 DQ892024:115 DQ895216:115 AM392907:115 KJ892231:116 CU676306:116 Y14820:138 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-35 |
|end=133376105 | |end=133376105 | ||
|end_of_center_position=133376096 | |end_of_center_position=133376096 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11476 | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148248 | |nearest_ensembl=ENSG00000148248 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001280789 |
|nearest_refseq=NM_033161 | |nearest_refseq=NM_033161 | ||
|nearest_unigene=Hs.512465 | |nearest_unigene=Hs.512465 | ||
| − | |num_trans= | + | |num_trans=33 |
|species=human | |species=human | ||
|start=133376085 | |start=133376085 | ||
|start_of_center_position=133376095 | |start_of_center_position=133376095 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-79(GCCCCTTTAAGA,-,0.00),-76(CCTTTAAGACGC,+,0.00),-38(GCCCCTTTAAGG,-,0.00),-37(CCCCTTTAAGGC,-,0.00),-36(CCCTTTAAGGCT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000485435.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102998.1 | |tss_id=hg_102998.1 | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 133376095 |
|---|---|
| End of the center position in the TSS region: | 133376096 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000485435.6 |
|---|---|
| Distance: | 0 |
| Num_trans: | 33 |
| All_trans: | ENST00000485435.6:0 AK315488:-13 AK295435:23 ENST00000371989.8:26 NM_001280789:26 NM_033161:26 AK299656:26 AK303309:26 AK316480:26 AK300004:27 AF078866:28 AF078867:28 ENST00000371991.3:43 BC111023:55 ENST00000545297.5:-61 ENST00000613129.4:-61 ENST00000618229.4:-61 NM_001280792:-61 NM_001280791:-61 NM_001280793:-61 NM_001280790:-61 BX647961:67 ENST00000371982.3:76 AK293434:86 ENST00000467910.5:95 BC018741:97 AB528538:112 DQ892024:115 DQ895216:115 AM392907:115 KJ892231:116 CU676306:116 Y14820:138 |
TATA-Box annotation
| Distance to TSS: | -35 |
|---|---|
| Nearest PromoterID: | NM_001280789 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -79(GCCCCTTTAAGA,-,0.00),-76(CCTTTAAGACGC,+,0.00),-38(GCCCCTTTAAGG,-,0.00),-37(CCCCTTTAAGGC,-,0.00),-36(CCCTTTAAGGCT,+,0.00) |
