Difference between revisions of "TSS:Hg 103000.1"
From referenceTSS
| Line 2: | Line 2: | ||
|XPMC2= | |XPMC2= | ||
|XPMC2H= | |XPMC2H= | ||
| − | |all_trans=ENST00000454825 | + | |all_trans=ENST00000454825.1:0 BC009274:0 AK310164:0 ENST00000478037.1:8 ENST00000371942.8:-11 NR_103995:-11 NM_001279350:-11 NR_103996:-11 NM_020385:-11 AK315904:-11 AK314333:-11 BC071691:12 AK304547:-12 ENST00000494045.5:13 AK025493:22 AL136894:-28 AF273304:-45 AF295774:-45 LF205604:-65 MA441181:-65 ENST00000371935.6:-97 NM_001279349:-97 AM392617:119 DQ891911:123 KJ899305:123 DQ895096:123 CU679283:123 NM_001279351:-173 AK295982:-173 LF346463:180 MA582040:180 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=27 |
|end=133417999 | |end=133417999 | ||
|end_of_center_position=133417983 | |end_of_center_position=133417983 | ||
|entrez_id=57109 | |entrez_id=57109 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=REX4 | + | |gene_alias=REX4{{!}}XPMC2{{!}}XPMC2H |
| − | |gene_description= | + | |gene_description=REX4 homolog, 3'-5' exonuclease |
|gene_id=57109 | |gene_id=57109 | ||
| − | |gene_name= | + | |gene_name=REX4 homolog, 3'-5' exonuclease |
|gene_source=HGNC:12820 | |gene_source=HGNC:12820 | ||
|gene_symbol=REXO4 | |gene_symbol=REXO4 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:12820 | |hgnc_mgi_id=HGNC:12820 | ||
|nearest_ensembl=ENSG00000148300 | |nearest_ensembl=ENSG00000148300 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001279350 |
|nearest_refseq=NM_020385 | |nearest_refseq=NM_020385 | ||
|nearest_unigene=Hs.438409 | |nearest_unigene=Hs.438409 | ||
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
|start=133417966 | |start=133417966 | ||
|start_of_center_position=133417982 | |start_of_center_position=133417982 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000454825 | + | |transcript_name=ENST00000454825.1 BC009274 AK310164 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103000.1 | |tss_id=hg_103000.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0C4DG31 | + | |uniprot_id=A0A0C4DG31 |
}} | }} | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133417982 |
|---|---|
| End of the center position in the TSS region: | 133417983 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000454825.1 BC009274 AK310164 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000454825.1:0 BC009274:0 AK310164:0 ENST00000478037.1:8 ENST00000371942.8:-11 NR_103995:-11 NM_001279350:-11 NR_103996:-11 NM_020385:-11 AK315904:-11 AK314333:-11 BC071691:12 AK304547:-12 ENST00000494045.5:13 AK025493:22 AL136894:-28 AF273304:-45 AF295774:-45 LF205604:-65 MA441181:-65 ENST00000371935.6:-97 NM_001279349:-97 AM392617:119 DQ891911:123 KJ899305:123 DQ895096:123 CU679283:123 NM_001279351:-173 AK295982:-173 LF346463:180 MA582040:180 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_001279350 |
| Entrez ID: | 57109 |
| Nearest Unigene: | Hs.438409 |
| Nearest Refseq: | NM_020385 |
| Nearest Ensembl: | ENSG00000148300 |
| Gene Name: | REX4 homolog, 3'-5' exonuclease |
| Gene Alias: | REX4|XPMC2|XPMC2H |
| Gene Description: | REX4 homolog, 3'-5' exonuclease |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
