Difference between revisions of "TSS:Hg 103044.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000371850.8:26 NM_003371:26 NM_001134398:26 BC132965:26 BC132967:26 S76992:67 AB587478:68 ENST00000406606.7:69 ENST00000486113.1:91 BX640754:186 ENST00000371851.1:-222 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:12658 | |hgnc_mgi_id=HGNC:12658 | ||
|nearest_ensembl=ENSG00000160293 | |nearest_ensembl=ENSG00000160293 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003371 |
|nearest_refseq=NM_003371 | |nearest_refseq=NM_003371 | ||
|nearest_unigene=Hs.369921 | |nearest_unigene=Hs.369921 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=133992349 | |start=133992349 | ||
|start_of_center_position=133992365 | |start_of_center_position=133992365 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_001134398 | + | |transcript_name=ENST00000371850.8 NM_003371 NM_001134398 BC132965 BC132967 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103044.1 | |tss_id=hg_103044.1 | ||
Revision as of 17:17, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 133992365 |
|---|---|
| End of the center position in the TSS region: | 133992366 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371850.8 NM_003371 NM_001134398 BC132965 BC132967 |
|---|---|
| Distance: | 26 |
| Num_trans: | 11 |
| All_trans: | ENST00000371850.8:26 NM_003371:26 NM_001134398:26 BC132965:26 BC132967:26 S76992:67 AB587478:68 ENST00000406606.7:69 ENST00000486113.1:91 BX640754:186 ENST00000371851.1:-222 |
TATA-Box annotation
| Distance to TSS: | -42 |
|---|---|
| Nearest PromoterID: | NM_003371 |
| Entrez ID: | 7410 |
| Nearest Unigene: | Hs.369921 |
| Nearest Refseq: | NM_003371 |
| Nearest Ensembl: | ENSG00000160293 |
| Gene Name: | vav guanine nucleotide exchange factor 2 |
| Gene Alias: | VAV-2 |
| Gene Description: | vav guanine nucleotide exchange factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
