Difference between revisions of "TSS:Hg 16399.1"
From referenceTSS
| Line 2: | Line 2: | ||
|DBCCR1L1= | |DBCCR1L1= | ||
|FAM5C= | |FAM5C= | ||
| − | |all_trans=AK123024:0 | + | |all_trans=AK123024:0 AB111893:-49 ENST00000367462.5:-284 NM_199051:-284 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=290 |
|end=190477580 | |end=190477580 | ||
|end_of_center_position=190477575 | |end_of_center_position=190477575 | ||
|entrez_id=339479 | |entrez_id=339479 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=DBCCR1L | + | |gene_alias=DBCCR1L{{!}}DBCCR1L1{{!}}FAM5C |
|gene_description=BMP/retinoic acid inducible neural specific 3 | |gene_description=BMP/retinoic acid inducible neural specific 3 | ||
|gene_id=339479 | |gene_id=339479 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_199051 | |nearest_refseq=NM_199051 | ||
|nearest_unigene=Hs.65765 | |nearest_unigene=Hs.65765 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=190477568 | |start=190477568 | ||
|start_of_center_position=190477574 | |start_of_center_position=190477574 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-99(CCCCATATAAAG,-,0.00),-97(CCATATAAAGCA,+,0.00) |
|transcript_name=AK123024 | |transcript_name=AK123024 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:51, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 190477574 |
|---|---|
| End of the center position in the TSS region: | 190477575 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK123024 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | AK123024:0 AB111893:-49 ENST00000367462.5:-284 NM_199051:-284 |
TATA-Box annotation
| Distance to TSS: | 290 |
|---|---|
| Nearest PromoterID: | NM_199051 |
| Entrez ID: | 339479 |
| Nearest Unigene: | Hs.65765 |
| Nearest Refseq: | NM_199051 |
| Nearest Ensembl: | ENSG00000162670 |
| Gene Name: | BMP/retinoic acid inducible neural specific 3 |
| Gene Alias: | DBCCR1L|DBCCR1L1|FAM5C |
| Gene Description: | BMP/retinoic acid inducible neural specific 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -99(CCCCATATAAAG,-,0.00),-97(CCATATAAAGCA,+,0.00) |
