Difference between revisions of "TSS:Hg 103094.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RbEST47= | |RbEST47= | ||
| − | |all_trans= | + | |all_trans=LF205611:172 MA441188:172 ENST00000429260.7:273 NM_144654:273 NM_001048265:273 DQ892784:287 DQ896031:287 AY927868:291 KJ895521:291 ENST00000371789.7:-364 AK024007:-364 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=172 |
| − | |distance_to_tss= | + | |distance_to_tss=183 |
|end=135500154 | |end=135500154 | ||
|end_of_center_position=135500148 | |end_of_center_position=135500148 | ||
| − | |entrez_id= | + | |entrez_id=NA |
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias= | + | |gene_alias= |
| − | |gene_description= | + | |gene_description= |
|gene_id=138162 | |gene_id=138162 | ||
| − | |gene_name= | + | |gene_name= |
|gene_source=HGNC:28435 | |gene_source=HGNC:28435 | ||
|gene_symbol=C9orf116 | |gene_symbol=C9orf116 | ||
|gene_synonyms=MGC29761 PIERCE1 RbEST47 | |gene_synonyms=MGC29761 PIERCE1 RbEST47 | ||
| − | |gene_type= | + | |gene_type= |
|hgnc_mgi_id=HGNC:28435 | |hgnc_mgi_id=HGNC:28435 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001371401 |
| − | |nearest_refseq= | + | |nearest_refseq= |
| − | |nearest_unigene= | + | |nearest_unigene= |
|num_trans=11 | |num_trans=11 | ||
|species=human | |species=human | ||
| Line 28: | Line 28: | ||
|start_of_center_position=135500147 | |start_of_center_position=135500147 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF205611 MA441188 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103094.1 | |tss_id=hg_103094.1 | ||
Latest revision as of 17:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 135500147 |
|---|---|
| End of the center position in the TSS region: | 135500148 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF205611 MA441188 |
|---|---|
| Distance: | 172 |
| Num_trans: | 11 |
| All_trans: | LF205611:172 MA441188:172 ENST00000429260.7:273 NM_144654:273 NM_001048265:273 DQ892784:287 DQ896031:287 AY927868:291 KJ895521:291 ENST00000371789.7:-364 AK024007:-364 |
TATA-Box annotation
| Distance to TSS: | 183 |
|---|---|
| Nearest PromoterID: | NM_001371401 |
| Entrez ID: | NA |
| Nearest Unigene: | |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.065 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
