Difference between revisions of "TSS:Hg 103109.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000409386.3:116 | + | |all_trans=ENST00000389532.9:-108 NM_015447:-108 ENST00000409386.3:116 LF383682:185 MA619259:185 GQ891365:185 AF116701:206 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| − | |distance= | + | |distance=-108 |
| − | |distance_to_tss= | + | |distance_to_tss=155 |
|end=135907438 | |end=135907438 | ||
|end_of_center_position=135907391 | |end_of_center_position=135907391 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_015447 | |nearest_refseq=NM_015447 | ||
|nearest_unigene=Hs.522493 | |nearest_unigene=Hs.522493 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=135907343 | |start=135907343 | ||
|start_of_center_position=135907390 | |start_of_center_position=135907390 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000389532.9 NM_015447 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103109.1 | |tss_id=hg_103109.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q5T5Y3 | + | |uniprot_id=A0A384NY94 Q5T5Y3 |
}} | }} | ||
Revision as of 17:19, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 135907390 |
|---|---|
| End of the center position in the TSS region: | 135907391 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000389532.9 NM_015447 |
|---|---|
| Distance: | -108 |
| Num_trans: | 7 |
| All_trans: | ENST00000389532.9:-108 NM_015447:-108 ENST00000409386.3:116 LF383682:185 MA619259:185 GQ891365:185 AF116701:206 |
TATA-Box annotation
| Distance to TSS: | 155 |
|---|---|
| Nearest PromoterID: | NM_015447 |
| Entrez ID: | 157922 |
| Nearest Unigene: | Hs.522493 |
| Nearest Refseq: | NM_015447 |
| Nearest Ensembl: | ENSG00000130559 |
| Gene Name: | calmodulin regulated spectrin associated protein 1 |
| Gene Alias: | - |
| Gene Description: | calmodulin regulated spectrin associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
