Difference between revisions of "TSS:Hg 103155.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SNAP190= | |SNAP190= | ||
| + | |all_trans=ENST00000637388.1:0 LF205597:-39 MA441174:-39 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-1735 | |distance_to_tss=-1735 | ||
|end=136400181 | |end=136400181 | ||
| Line 9: | Line 10: | ||
|entrez_id=6621 | |entrez_id=6621 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=PTFalpha | + | |gene_alias=PTFalpha{{!}}SNAP190 |
|gene_description=small nuclear RNA activating complex polypeptide 4 | |gene_description=small nuclear RNA activating complex polypeptide 4 | ||
| − | |gene_name=SNAPC4 | + | |gene_id=6621 |
| + | |gene_name=small nuclear RNA activating complex polypeptide 4 | ||
| + | |gene_source=HGNC:11137 | ||
| + | |gene_symbol=SNAPC4 | ||
| + | |gene_synonyms=FLJ13451 PTFalpha SNAP190 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11137 | ||
|nearest_ensembl=ENSG00000165684 | |nearest_ensembl=ENSG00000165684 | ||
|nearest_promoter_id=NM_003086 | |nearest_promoter_id=NM_003086 | ||
|nearest_refseq=NM_003086 | |nearest_refseq=NM_003086 | ||
|nearest_unigene=Hs.113265 | |nearest_unigene=Hs.113265 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=136400162 | |start=136400162 | ||
|start_of_center_position=136400171 | |start_of_center_position=136400171 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000637388.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103155.1 | |tss_id=hg_103155.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A1B0GUB4 | ||
}} | }} | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136400171 |
|---|---|
| End of the center position in the TSS region: | 136400172 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000637388.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000637388.1:0 LF205597:-39 MA441174:-39 |
TATA-Box annotation
| Distance to TSS: | -1735 |
|---|---|
| Nearest PromoterID: | NM_003086 |
| Entrez ID: | 6621 |
| Nearest Unigene: | Hs.113265 |
| Nearest Refseq: | NM_003086 |
| Nearest Ensembl: | ENSG00000165684 |
| Gene Name: | small nuclear RNA activating complex polypeptide 4 |
| Gene Alias: | PTFalpha|SNAP190 |
| Gene Description: | small nuclear RNA activating complex polypeptide 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
