Difference between revisions of "TSS:Hg 103159.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000298537.11:0 ENST00000371725.7:0 | + | |all_trans=ENST00000357365.8:0 ENST00000298537.11:0 ENST00000371725.7:0 NM_006643:0 NM_001039708:0 NM_001039707:0 ENST00000371723.4:7 BC014515:131 ENST00000446833.1:332 DQ893083:465 DQ896349:465 AY349357:465 KJ902160:465 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=136410628 | |end=136410628 | ||
|end_of_center_position=136410614 | |end_of_center_position=136410614 | ||
|entrez_id=10807 | |entrez_id=10807 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=NY-CO-3 | + | |gene_alias=NY-CO-3{{!}}SDCCAG3 |
| − | |gene_description= | + | |gene_description=endosome associated trafficking regulator 1 |
|gene_id=10807 | |gene_id=10807 | ||
| − | |gene_name= | + | |gene_name=endosome associated trafficking regulator 1 |
|gene_source=HGNC:10667 | |gene_source=HGNC:10667 | ||
| − | |gene_symbol= | + | |gene_symbol=ENTR1 |
|gene_synonyms=NY-CO-3 | |gene_synonyms=NY-CO-3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10667 | |hgnc_mgi_id=HGNC:10667 | ||
|nearest_ensembl=ENSG00000165689 | |nearest_ensembl=ENSG00000165689 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001039707 |
|nearest_refseq=NM_006643 | |nearest_refseq=NM_006643 | ||
|nearest_unigene=Hs.94300 | |nearest_unigene=Hs.94300 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=136410599 | |start=136410599 | ||
|start_of_center_position=136410613 | |start_of_center_position=136410613 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000298537.11 ENST00000371725.7 NM_001039708 | + | |transcript_name=ENST00000357365.8 ENST00000298537.11 ENST00000371725.7 NM_006643 NM_001039708 NM_001039707 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103159.1 | |tss_id=hg_103159.1 | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136410613 |
|---|---|
| End of the center position in the TSS region: | 136410614 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000357365.8 ENST00000298537.11 ENST00000371725.7 NM_006643 NM_001039708 NM_001039707 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000357365.8:0 ENST00000298537.11:0 ENST00000371725.7:0 NM_006643:0 NM_001039708:0 NM_001039707:0 ENST00000371723.4:7 BC014515:131 ENST00000446833.1:332 DQ893083:465 DQ896349:465 AY349357:465 KJ902160:465 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001039707 |
| Entrez ID: | 10807 |
| Nearest Unigene: | Hs.94300 |
| Nearest Refseq: | NM_006643 |
| Nearest Ensembl: | ENSG00000165689 |
| Gene Name: | endosome associated trafficking regulator 1 |
| Gene Alias: | NY-CO-3|SDCCAG3 |
| Gene Description: | endosome associated trafficking regulator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
