Difference between revisions of "TSS:Hg 243181.1"
From referenceTSS
| Line 6: | Line 6: | ||
|IMD26= | |IMD26= | ||
|XRCC7= | |XRCC7= | ||
| − | |all_trans= | + | |all_trans=ENST00000680133.1:-63 ENST00000680924.1:-87 ENST00000679595.1:-114 ENST00000651671.1:-114 ENST00000681454.1:-114 ENST00000680668.1:-114 ENST00000681135.1:-114 ENST00000680218.1:-114 NM_017617:-114 LF807178:148 LZ947776:148 AF308602:148 M73980:148 LY481191:-268 LY496063:-268 LY497906:-268 LY499411:-268 LY500814:-268 LZ239136:-268 MS869228:-268 MS869733:-268 MS880726:-268 MS996972:-268 MA806442:-268 MA823099:-268 LY616900:-268 FR772924:-268 LF159964:-268 LQ072053:-268 LY481116:-268 LY495753:-268 LY497553:-268 LY498863:-268 LY500437:-268 LZ238578:-268 MA405496:-268 MA645554:-268 MA733438:-268 MS637921:-268 MS868918:-268 MS869356:-268 MS880178:-268 MS996619:-268 MA802607:-268 MA805894:-268 MA822422:-268 LY616342:-268 MC002655:-268 LG052812:-325 LY481152:-325 LY495904:-325 LY497728:-325 LY499132:-325 LY500623:-325 LZ238842:-325 MS869069:-325 MS869542:-325 MS880447:-325 MS996794:-325 MA806172:-325 MA822759:-325 LY616606:-325 MC002680:-325 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=-63 |
|distance_to_tss=1 | |distance_to_tss=1 | ||
|end=47960183 | |end=47960183 | ||
| Line 15: | Line 15: | ||
|entrez_id=5591 | |entrez_id=5591 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=DNA-PKcs | + | |gene_alias=DNA-PKC{{!}}DNA-PKcs{{!}}DNAPK{{!}}DNAPKc{{!}}DNPK1{{!}}HYRC{{!}}HYRC1{{!}}IMD26{{!}}XRCC7{{!}}p350 |
| − | |gene_description= | + | |gene_description=protein kinase, DNA-activated, catalytic subunit |
| − | |gene_id= | + | |gene_id=4851 |
| − | |gene_name= | + | |gene_name=notch receptor 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:7881 |
| − | |gene_symbol= | + | |gene_symbol=NOTCH1 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:7881 |
|nearest_ensembl=ENSG00000253729 | |nearest_ensembl=ENSG00000253729 | ||
|nearest_promoter_id=NM_006904 | |nearest_promoter_id=NM_006904 | ||
|nearest_refseq=NM_006904 | |nearest_refseq=NM_006904 | ||
|nearest_unigene=Hs.491682 | |nearest_unigene=Hs.491682 | ||
| − | |num_trans= | + | |num_trans=63 |
|p350= | |p350= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=136545933 | |start_of_center_position=136545933 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000680133.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243181.1 | |tss_id=hg_243181.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:32, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136545933 |
|---|---|
| End of the center position in the TSS region: | 136545934 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000680133.1 |
|---|---|
| Distance: | -63 |
| Num_trans: | 63 |
| All_trans: | ENST00000680133.1:-63 ENST00000680924.1:-87 ENST00000679595.1:-114 ENST00000651671.1:-114 ENST00000681454.1:-114 ENST00000680668.1:-114 ENST00000681135.1:-114 ENST00000680218.1:-114 NM_017617:-114 LF807178:148 LZ947776:148 AF308602:148 M73980:148 LY481191:-268 LY496063:-268 LY497906:-268 LY499411:-268 LY500814:-268 LZ239136:-268 MS869228:-268 MS869733:-268 MS880726:-268 MS996972:-268 MA806442:-268 MA823099:-268 LY616900:-268 FR772924:-268 LF159964:-268 LQ072053:-268 LY481116:-268 LY495753:-268 LY497553:-268 LY498863:-268 LY500437:-268 LZ238578:-268 MA405496:-268 MA645554:-268 MA733438:-268 MS637921:-268 MS868918:-268 MS869356:-268 MS880178:-268 MS996619:-268 MA802607:-268 MA805894:-268 MA822422:-268 LY616342:-268 MC002655:-268 LG052812:-325 LY481152:-325 LY495904:-325 LY497728:-325 LY499132:-325 LY500623:-325 LZ238842:-325 MS869069:-325 MS869542:-325 MS880447:-325 MS996794:-325 MA806172:-325 MA822759:-325 LY616606:-325 MC002680:-325 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_006904 |
| Entrez ID: | 5591 |
| Nearest Unigene: | Hs.491682 |
| Nearest Refseq: | NM_006904 |
| Nearest Ensembl: | ENSG00000253729 |
| Gene Name: | notch receptor 1 |
| Gene Alias: | DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 |
| Gene Description: | protein kinase, DNA-activated, catalytic subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
