Difference between revisions of "TSS:Hg 103206.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|LCN5= | |LCN5= | ||
| − | |all_trans=ENST00000482893 | + | |all_trans=ENST00000482893.1:46 AK090647:46 ENST00000479767.1:127 BC024235:127 GQ891310:-342 HQ258567:-344 KJ895524:-344 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 10: | Line 10: | ||
|entrez_id=138307 | |entrez_id=138307 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=EP17 | + | |gene_alias=EP17{{!}}LCN5 |
|gene_description=lipocalin 8 | |gene_description=lipocalin 8 | ||
|gene_id=138307 | |gene_id=138307 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_178469 | |nearest_refseq=NM_178469 | ||
|nearest_unigene=Hs.323991 | |nearest_unigene=Hs.323991 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=136757583 | |start=136757583 | ||
|start_of_center_position=136757585 | |start_of_center_position=136757585 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-80(GGTTTTTAAAAG,-,0.00),-78(TTTTTAAAAGTC,+,0.00) |
| − | |transcript_name=ENST00000482893 | + | |transcript_name=ENST00000482893.1 AK090647 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103206.1 | |tss_id=hg_103206.1 | ||
Revision as of 17:21, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136757585 |
|---|---|
| End of the center position in the TSS region: | 136757586 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000482893.1 AK090647 |
|---|---|
| Distance: | 46 |
| Num_trans: | 7 |
| All_trans: | ENST00000482893.1:46 AK090647:46 ENST00000479767.1:127 BC024235:127 GQ891310:-342 HQ258567:-344 KJ895524:-344 |
TATA-Box annotation
| Distance to TSS: | 693 |
|---|---|
| Nearest PromoterID: | NM_178469 |
| Entrez ID: | 138307 |
| Nearest Unigene: | Hs.323991 |
| Nearest Refseq: | NM_178469 |
| Nearest Ensembl: | ENSG00000204001 |
| Gene Name: | lipocalin 8 |
| Gene Alias: | EP17|LCN5 |
| Gene Description: | lipocalin 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(GGTTTTTAAAAG,-,0.00),-78(TTTTTAAAAGTC,+,0.00) |
