Difference between revisions of "TSS:Hg 103232.1"
From referenceTSS
| Line 2: | Line 2: | ||
|EDF-1= | |EDF-1= | ||
|MBF1= | |MBF1= | ||
| − | |all_trans=ENST00000371649.5 | + | |all_trans=ENST00000371649.5:0 AJ005259:0 BC015500:0 AB002282:10 AB002283:10 ENST00000371648.4:12 AB590058:16 DQ891577:18 DQ894770:18 KJ892605:19 ENST00000224073.6:-20 NM_001281299:-20 NM_003792:-20 NM_001281298:-20 NM_001281297:-20 BT009863:20 CR541914:20 NM_153200:-48 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=25 |
|end=136866288 | |end=136866288 | ||
|end_of_center_position=136866283 | |end_of_center_position=136866283 | ||
|entrez_id=8721 | |entrez_id=8721 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=CFAP280 | + | |gene_alias=CFAP280{{!}}EDF-1{{!}}MBF1 |
|gene_description=endothelial differentiation related factor 1 | |gene_description=endothelial differentiation related factor 1 | ||
|gene_id=8721 | |gene_id=8721 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:3164 | |hgnc_mgi_id=HGNC:3164 | ||
|nearest_ensembl=ENSG00000107223 | |nearest_ensembl=ENSG00000107223 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001281298 |
|nearest_refseq=NM_003792 | |nearest_refseq=NM_003792 | ||
|nearest_unigene=Hs.174050 | |nearest_unigene=Hs.174050 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=136866277 | |start=136866277 | ||
|start_of_center_position=136866282 | |start_of_center_position=136866282 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000371649.5 | + | |transcript_name=ENST00000371649.5 AJ005259 BC015500 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103232.1 | |tss_id=hg_103232.1 | ||
Revision as of 17:22, 15 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 136866282 |
|---|---|
| End of the center position in the TSS region: | 136866283 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000371649.5 AJ005259 BC015500 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000371649.5:0 AJ005259:0 BC015500:0 AB002282:10 AB002283:10 ENST00000371648.4:12 AB590058:16 DQ891577:18 DQ894770:18 KJ892605:19 ENST00000224073.6:-20 NM_001281299:-20 NM_003792:-20 NM_001281298:-20 NM_001281297:-20 BT009863:20 CR541914:20 NM_153200:-48 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001281298 |
| Entrez ID: | 8721 |
| Nearest Unigene: | Hs.174050 |
| Nearest Refseq: | NM_003792 |
| Nearest Ensembl: | ENSG00000107223 |
| Gene Name: | endothelial differentiation related factor 1 |
| Gene Alias: | CFAP280|EDF-1|MBF1 |
| Gene Description: | endothelial differentiation related factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
