Difference between revisions of "TSS:Hg 103283.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000341511.11:12 NM_001606:12 ENST00000265662.9:-23 ENST00000371605.7:-23 AF178941:59 ENST00000494046.5:65 AK308738:65 ENST00000464876.5:71 BC090860:71 BC064542:73 ENST00000492260.5:78 BC029282:78 AF327657:103 AB384556:105 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.21 | |cpg_percent=0.21 | ||
| − | |distance= | + | |distance=12 |
| − | |distance_to_tss= | + | |distance_to_tss=-20 |
|end=137028265 | |end=137028265 | ||
|end_of_center_position=137028257 | |end_of_center_position=137028257 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001606 | |nearest_refseq=NM_001606 | ||
|nearest_unigene=Hs.421202 | |nearest_unigene=Hs.421202 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=137028248 | |start=137028248 | ||
|start_of_center_position=137028256 | |start_of_center_position=137028256 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-88(GCGCCTTTAAGC,-,0.00),-86(GCCTTTAAGCGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000341511.11 NM_001606 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103283.1 | |tss_id=hg_103283.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9BZC7 |
}} | }} | ||
Revision as of 17:23, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 137028256 |
|---|---|
| End of the center position in the TSS region: | 137028257 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000341511.11 NM_001606 |
|---|---|
| Distance: | 12 |
| Num_trans: | 14 |
| All_trans: | ENST00000341511.11:12 NM_001606:12 ENST00000265662.9:-23 ENST00000371605.7:-23 AF178941:59 ENST00000494046.5:65 AK308738:65 ENST00000464876.5:71 BC090860:71 BC064542:73 ENST00000492260.5:78 BC029282:78 AF327657:103 AB384556:105 |
TATA-Box annotation
| Distance to TSS: | -20 |
|---|---|
| Nearest PromoterID: | NM_001606 |
| Entrez ID: | 20 |
| Nearest Unigene: | Hs.421202 |
| Nearest Refseq: | NM_001606 |
| Nearest Ensembl: | ENSG00000107331 |
| Gene Name: | ATP binding cassette subfamily A member 2 |
| Gene Alias: | ABC2 |
| Gene Description: | ATP binding cassette subfamily A member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.21 |
| GC%: | 0.860697 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -88(GCGCCTTTAAGC,-,0.00),-86(GCCTTTAAGCGG,+,0.00) |
