Difference between revisions of "TSS:Hg 243191.1"
From referenceTSS
| Line 3: | Line 3: | ||
|FIP200= | |FIP200= | ||
|PPP1R131= | |PPP1R131= | ||
| + | |all_trans=AK303976:103 ENST00000371482.5:154 AL389945:154 ENST00000371468.1:318 ENST00000484316.5:378 BC016862:-480 AL389944:-487 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=103 |
| − | |distance_to_tss= | + | |distance_to_tss=24 |
|end=52714416 | |end=52714416 | ||
|end_of_center_position=137454810 | |end_of_center_position=137454810 | ||
|entrez_id=9821 | |entrez_id=9821 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=ATG17 | + | |gene_alias=ATG17{{!}}CC1{{!}}FIP200{{!}}PPP1R131 |
|gene_description=RB1 inducible coiled-coil 1 | |gene_description=RB1 inducible coiled-coil 1 | ||
| − | |gene_name= | + | |gene_id=26012 |
| + | |gene_name=NMDA receptor synaptonuclear signaling and neuronal migration factor | ||
| + | |gene_source=HGNC:29843 | ||
| + | |gene_symbol=NSMF | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29843 | ||
|nearest_ensembl=ENSG00000023287 | |nearest_ensembl=ENSG00000023287 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_014781 |
|nearest_refseq=NM_014781 | |nearest_refseq=NM_014781 | ||
|nearest_unigene=Hs.196102 | |nearest_unigene=Hs.196102 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=52714406 | |start=52714406 | ||
|start_of_center_position=137454809 | |start_of_center_position=137454809 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK303976 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243191.1 | |tss_id=hg_243191.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B7Z8V3 | ||
}} | }} | ||
Revision as of 16:33, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 137454809 |
|---|---|
| End of the center position in the TSS region: | 137454810 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK303976 |
|---|---|
| Distance: | 103 |
| Num_trans: | 7 |
| All_trans: | AK303976:103 ENST00000371482.5:154 AL389945:154 ENST00000371468.1:318 ENST00000484316.5:378 BC016862:-480 AL389944:-487 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_014781 |
| Entrez ID: | 9821 |
| Nearest Unigene: | Hs.196102 |
| Nearest Refseq: | NM_014781 |
| Nearest Ensembl: | ENSG00000023287 |
| Gene Name: | NMDA receptor synaptonuclear signaling and neuronal migration factor |
| Gene Alias: | ATG17|CC1|FIP200|PPP1R131 |
| Gene Description: | RB1 inducible coiled-coil 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
