Difference between revisions of "TSS:Mm 90014.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK145269:0 | + | |all_trans=ENSMUST00000218348.1:0 AK145269:0 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=9630024B22 | |gene_alias=9630024B22 | ||
| − | |gene_description= | + | |gene_description=RAB21, member RAS oncogene family |
|gene_id=100038558 | |gene_id=100038558 | ||
|gene_name=predicted gene 10752 | |gene_name=predicted gene 10752 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_024454 | |nearest_refseq=NM_024454 | ||
|nearest_unigene=Mm.21936 | |nearest_unigene=Mm.21936 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=115315640 | |start=115315640 | ||
|start_of_center_position=115315655 | |start_of_center_position=115315655 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-80(CCTCTAATGGCG,+,0.00) |
| − | |transcript_name=AK145269 | + | |transcript_name=ENSMUST00000218348.1 AK145269 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_90014.1 | |tss_id=mm_90014.1 | ||
Revision as of 00:18, 22 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 115315655 |
|---|---|
| End of the center position in the TSS region: | 115315656 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000218348.1 AK145269 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENSMUST00000218348.1:0 AK145269:0 |
TATA-Box annotation
| Distance to TSS: | -64 |
|---|---|
| Nearest PromoterID: | NM_024454 |
| Entrez ID: | 216344 |
| Nearest Unigene: | Mm.21936 |
| Nearest Refseq: | NM_024454 |
| Nearest Ensembl: | ENSMUSG00000020132 |
| Gene Name: | predicted gene 10752 |
| Gene Alias: | 9630024B22 |
| Gene Description: | RAB21, member RAS oncogene family |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(CCTCTAATGGCG,+,0.00) |
