Difference between revisions of "TSS:Hg 243738.1"
From referenceTSS
| Line 9: | Line 9: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=10 | |distance_to_tss=10 | ||
|end=95507189 | |end=95507189 | ||
| Line 15: | Line 15: | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| − | |gene_name= | + | |gene_name=PTCH1 |
|gene_source=HGNC:9585 | |gene_source=HGNC:9585 | ||
|gene_symbol=PTCH1 | |gene_symbol=PTCH1 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=95507188 | |start=95507188 | ||
|start_of_center_position=12977061 | |start_of_center_position=12977061 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243738.1 | |tss_id=hg_243738.1 | ||
Revision as of 16:45, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 12977061 |
|---|---|
| End of the center position in the TSS region: | 12977062 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001083607 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
