Difference between revisions of "TSS:Hg 243970.1"
From referenceTSS
| Line 6: | Line 6: | ||
|PSCTK1= | |PSCTK1= | ||
|XLA= | |XLA= | ||
| − | |all_trans= | + | |all_trans=ENST00000469223.5:10 ENST00000376643.6:-83 AK302926:97 ENST00000376610.6:166 NM_001321229:166 ENST00000483656.5:208 ENST00000462730.5:233 ENST00000376619.6:251 ENST00000477528.5:272 AL137696:272 ENST00000465269.5:281 BC005872:281 ENST00000334136.11:284 NM_001321231:284 NM_001321228:284 NM_006044:284 NM_001321230:284 NM_001321226:284 NM_001321227:284 NR_135593:284 NR_135592:284 AK024083:291 AJ011972:297 ENST00000476625.5:299 ENST00000646703.1:301 AB020708:318 BC069243:319 ENST00000477561.5:327 ENST00000643659.1:350 ENST00000643374.1:376 AK295884:382 ENST00000644068.1:385 NM_001321225:-385 ENST00000438518.5:-387 ENST00000441703.6:403 ENST00000643934.1:404 ENST00000423941.5:-406 BC011498:407 AK095124:410 ENST00000489352.5:424 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=10 |
|distance_to_tss=23 | |distance_to_tss=23 | ||
|end=101390773 | |end=101390773 | ||
| Line 15: | Line 15: | ||
|entrez_id=695 | |entrez_id=695 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=AGMX1 | + | |gene_alias=AGMX1{{!}}AT{{!}}ATK{{!}}BPK{{!}}IGHD3{{!}}IMD1{{!}}PSCTK1{{!}}XLA |
|gene_description=Bruton tyrosine kinase | |gene_description=Bruton tyrosine kinase | ||
| − | |gene_id= | + | |gene_id=10013 |
| − | |gene_name= | + | |gene_name=histone deacetylase 6 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:14064 |
| − | |gene_symbol= | + | |gene_symbol=HDAC6 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ16239 HD6 JM21 KIAA0901 PPP1R90 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:14064 |
|nearest_ensembl=ENSG00000010671 | |nearest_ensembl=ENSG00000010671 | ||
|nearest_promoter_id=NM_001287344 | |nearest_promoter_id=NM_001287344 | ||
|nearest_refseq=NM_000061 | |nearest_refseq=NM_000061 | ||
|nearest_unigene=Hs.159494 | |nearest_unigene=Hs.159494 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=101390772 | |start=101390772 | ||
|start_of_center_position=48801782 | |start_of_center_position=48801782 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-80(CCGCCTAAAGGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000469223.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243970.1 | |tss_id=hg_243970.1 | ||
Revision as of 16:51, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48801782 |
|---|---|
| End of the center position in the TSS region: | 48801783 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000469223.5 |
|---|---|
| Distance: | 10 |
| Num_trans: | 40 |
| All_trans: | ENST00000469223.5:10 ENST00000376643.6:-83 AK302926:97 ENST00000376610.6:166 NM_001321229:166 ENST00000483656.5:208 ENST00000462730.5:233 ENST00000376619.6:251 ENST00000477528.5:272 AL137696:272 ENST00000465269.5:281 BC005872:281 ENST00000334136.11:284 NM_001321231:284 NM_001321228:284 NM_006044:284 NM_001321230:284 NM_001321226:284 NM_001321227:284 NR_135593:284 NR_135592:284 AK024083:291 AJ011972:297 ENST00000476625.5:299 ENST00000646703.1:301 AB020708:318 BC069243:319 ENST00000477561.5:327 ENST00000643659.1:350 ENST00000643374.1:376 AK295884:382 ENST00000644068.1:385 NM_001321225:-385 ENST00000438518.5:-387 ENST00000441703.6:403 ENST00000643934.1:404 ENST00000423941.5:-406 BC011498:407 AK095124:410 ENST00000489352.5:424 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001287344 |
| Entrez ID: | 695 |
| Nearest Unigene: | Hs.159494 |
| Nearest Refseq: | NM_000061 |
| Nearest Ensembl: | ENSG00000010671 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | AGMX1|AT|ATK|BPK|IGHD3|IMD1|PSCTK1|XLA |
| Gene Description: | Bruton tyrosine kinase |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(CCGCCTAAAGGG,-,0.00) |
