Difference between revisions of "TSS:Hg 196296.1"
From referenceTSS
| Line 3: | Line 3: | ||
|JM21= | |JM21= | ||
|PPP1R90= | |PPP1R90= | ||
| − | |all_trans=ENST00000468949 | + | |all_trans=ENST00000468949.1:26 AK303012:26 BC013737:-30 BT006649:-48 AB385398:-48 AF132609:-48 KJ902051:-50 NR_135591:-78 ENST00000647398.1:134 ENST00000493923.1:154 ENST00000440653.1:-191 ENST00000443563.5:-226 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 12: | Line 12: | ||
|entrez_id=10013 | |entrez_id=10013 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=CPBHM | + | |gene_alias=CPBHM{{!}}HD6{{!}}JM21{{!}}PPP1R90 |
|gene_description=histone deacetylase 6 | |gene_description=histone deacetylase 6 | ||
|gene_id=10013 | |gene_id=10013 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_006044 | |nearest_refseq=NM_006044 | ||
|nearest_unigene=Hs.6764 | |nearest_unigene=Hs.6764 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=48802740 | |start=48802740 | ||
|start_of_center_position=48802747 | |start_of_center_position=48802747 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000468949 | + | |transcript_name=ENST00000468949.1 AK303012 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_196296.1 | |tss_id=hg_196296.1 | ||
Revision as of 05:14, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48802747 |
|---|---|
| End of the center position in the TSS region: | 48802748 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000468949.1 AK303012 |
|---|---|
| Distance: | 26 |
| Num_trans: | 12 |
| All_trans: | ENST00000468949.1:26 AK303012:26 BC013737:-30 BT006649:-48 AB385398:-48 AF132609:-48 KJ902051:-50 NR_135591:-78 ENST00000647398.1:134 ENST00000493923.1:154 ENST00000440653.1:-191 ENST00000443563.5:-226 |
TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NR_135591 |
| Entrez ID: | 10013 |
| Nearest Unigene: | Hs.6764 |
| Nearest Refseq: | NM_006044 |
| Nearest Ensembl: | ENSG00000094631 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | CPBHM|HD6|JM21|PPP1R90 |
| Gene Description: | histone deacetylase 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
