Difference between revisions of "TSS:Hg 103637.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NET1A= | |NET1A= | ||
| − | |all_trans=ENST00000355029. | + | |all_trans=ENST00000355029.9:0 NM_001047160:0 AK299335:18 BC053553:22 AB209852:28 S82401:109 AB587387:113 CU690984:115 KJ892985:115 GQ891307:116 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=5412577 | |end=5412577 | ||
|end_of_center_position=5412560 | |end_of_center_position=5412560 | ||
|entrez_id=10276 | |entrez_id=10276 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=ARHGEF8 | + | |gene_alias=ARHGEF8{{!}}NET1A |
|gene_description=neuroepithelial cell transforming 1 | |gene_description=neuroepithelial cell transforming 1 | ||
|gene_id=10276 | |gene_id=10276 | ||
| − | |gene_name=neuroepithelial cell transforming 1 | + | |gene_name=neuroepithelial cell transforming 1; solute carrier family 6 member 5 |
| − | |gene_source=HGNC:14592 | + | |gene_source=HGNC:11051 HGNC:14592 |
| − | |gene_symbol=NET1 | + | |gene_symbol=NET1 SLC6A5 |
| − | |gene_synonyms=ARHGEF8 NET1A | + | |gene_synonyms=ARHGEF8 GLYT2 NET1A |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC:14592 | + | |hgnc_mgi_id=HGNC:11051 HGNC:14592 |
|nearest_ensembl=ENSG00000173848 | |nearest_ensembl=ENSG00000173848 | ||
|nearest_promoter_id=NM_001047160 | |nearest_promoter_id=NM_001047160 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=5412559 | |start_of_center_position=5412559 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000355029. | + | |transcript_name=ENST00000355029.9 NM_001047160 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103637.1 | |tss_id=hg_103637.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q7Z628 | + | |uniprot_id=Q5SQI5 Q7Z628 |
}} | }} | ||
Revision as of 17:31, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5412559 |
|---|---|
| End of the center position in the TSS region: | 5412560 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000355029.9 NM_001047160 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000355029.9:0 NM_001047160:0 AK299335:18 BC053553:22 AB209852:28 S82401:109 AB587387:113 CU690984:115 KJ892985:115 GQ891307:116 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_001047160 |
| Entrez ID: | 10276 |
| Nearest Unigene: | Hs.25155 |
| Nearest Refseq: | NM_005863 |
| Nearest Ensembl: | ENSG00000173848 |
| Gene Name: | neuroepithelial cell transforming 1; solute carrier family 6 member 5 |
| Gene Alias: | ARHGEF8|NET1A |
| Gene Description: | neuroepithelial cell transforming 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
