Difference between revisions of "TSS:Hg 103714.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000613651. | + | |all_trans=ENST00000613651.2:-106 ENST00000667809.1:-112 AY007155:-129 ENST00000663449.1:-162 ENST00000455810.5:-243 NR_036502:-243 NR_036503:-243 ENST00000445427.1:-249 LP895775:-269 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance=- | + | |distance=-106 |
|distance_to_tss=-26 | |distance_to_tss=-26 | ||
|end=6580676 | |end=6580676 | ||
| Line 9: | Line 9: | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=PRKCT | + | |gene_alias=PRKCT{{!}}nPKC-theta |
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
|gene_id=439949 | |gene_id=439949 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=6580671 | |start_of_center_position=6580671 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=58(CGCTAGAAAGGG,-,0.00),85(CCTTTTAAAATG,+,0.00) |
| − | |transcript_name=ENST00000613651. | + | |transcript_name=ENST00000613651.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103714.1 | |tss_id=hg_103714.1 | ||
Revision as of 17:33, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6580671 |
|---|---|
| End of the center position in the TSS region: | 6580672 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000613651.2 |
|---|---|
| Distance: | -106 |
| Num_trans: | 9 |
| All_trans: | ENST00000613651.2:-106 ENST00000667809.1:-112 AY007155:-129 ENST00000663449.1:-162 ENST00000455810.5:-243 NR_036502:-243 NR_036503:-243 ENST00000445427.1:-249 LP895775:-269 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT|nPKC-theta |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 58(CGCTAGAAAGGG,-,0.00),85(CCTTTTAAAATG,+,0.00) |
