Difference between revisions of "TSS:Hg 103757.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SHAP= | |SHAP= | ||
| − | |all_trans=AK225277:0 ENST00000379587.4 | + | |all_trans=AK225277:0 ENST00000379587.4:-4 BC132685:-18 ENST00000429820.5:-24 X07173:-30 ENST00000480387.1:-36 AK297334:-36 AK225329:-36 ENST00000473227.5:-58 AK291379:-78 ENST00000358415.9:-88 NM_002216:-88 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=97 |
|end=7703423 | |end=7703423 | ||
|end_of_center_position=7703414 | |end_of_center_position=7703414 | ||
|entrez_id=3698 | |entrez_id=3698 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| − | |gene_alias=H2P | + | |gene_alias=H2P{{!}}SHAP |
|gene_description=inter-alpha-trypsin inhibitor heavy chain 2 | |gene_description=inter-alpha-trypsin inhibitor heavy chain 2 | ||
|gene_id=3698 | |gene_id=3698 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_002216 | |nearest_refseq=NM_002216 | ||
|nearest_unigene=Hs.75285 | |nearest_unigene=Hs.75285 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=7703403 | |start=7703403 | ||
|start_of_center_position=7703413 | |start_of_center_position=7703413 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=84(CCCCATAAATGG,-,0.00),86(CCATAAATGGAC,+,0.00) |
|transcript_name=AK225277 | |transcript_name=AK225277 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:34, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7703413 |
|---|---|
| End of the center position in the TSS region: | 7703414 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK225277 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | AK225277:0 ENST00000379587.4:-4 BC132685:-18 ENST00000429820.5:-24 X07173:-30 ENST00000480387.1:-36 AK297334:-36 AK225329:-36 ENST00000473227.5:-58 AK291379:-78 ENST00000358415.9:-88 NM_002216:-88 |
TATA-Box annotation
| Distance to TSS: | 97 |
|---|---|
| Nearest PromoterID: | NM_002216 |
| Entrez ID: | 3698 |
| Nearest Unigene: | Hs.75285 |
| Nearest Refseq: | NM_002216 |
| Nearest Ensembl: | ENSG00000151655 |
| Gene Name: | inter-alpha-trypsin inhibitor heavy chain 2 |
| Gene Alias: | H2P|SHAP |
| Gene Description: | inter-alpha-trypsin inhibitor heavy chain 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 84(CCCCATAAATGG,-,0.00),86(CCATAAATGGAC,+,0.00) |
