Difference between revisions of "TSS:Hg 232394.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC000470:0 BC013394:0 BC013865:2 ENST00000460820.6:-5 ENST00000465936.5:-10 AK294061:-10 BC010380:-10 BC016812:-11 AK129907:-11 ENST00000356708.12:-12 ENST00000335698.4:-12 NM_001001973:-12 AK292896:-12 AK296803:-12 D16562:-12 D16563:-12 ENST00000460362.5:-14 CU677727:18 HQ448142:18 KJ890734:18 KJ896474:18 CR457403:19 ENST00000472202.1:21 BC020824:-21 ENST00000462760.1:-30 BC000931:-33 BC026049:40 ENST00000493053.5:-42 LF383674:-59 MA619251:-59 NM_005174:-85 NM_001320886:-85 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=351 | |distance_to_tss=351 | ||
|end=75210505 | |end=75210505 | ||
| Line 11: | Line 11: | ||
|gene_alias=POR | |gene_alias=POR | ||
|gene_description=voltage dependent anion channel 2 | |gene_description=voltage dependent anion channel 2 | ||
| − | |gene_id= | + | |gene_id=509 |
| − | |gene_name= | + | |gene_name=ATP synthase F1 subunit gamma |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:833 |
| − | |gene_symbol= | + | |gene_symbol=ATP5F1C |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:833 |
|nearest_ensembl=ENSG00000165637 | |nearest_ensembl=ENSG00000165637 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001184823 |
|nearest_refseq=NM_003375 | |nearest_refseq=NM_003375 | ||
|nearest_unigene=Hs.355927 | |nearest_unigene=Hs.355927 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=7788188 | |start_of_center_position=7788188 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC000470 BC013394 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232394.1 | |tss_id=hg_232394.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:23, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 7788188 |
|---|---|
| End of the center position in the TSS region: | 7788189 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC000470 BC013394 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | BC000470:0 BC013394:0 BC013865:2 ENST00000460820.6:-5 ENST00000465936.5:-10 AK294061:-10 BC010380:-10 BC016812:-11 AK129907:-11 ENST00000356708.12:-12 ENST00000335698.4:-12 NM_001001973:-12 AK292896:-12 AK296803:-12 D16562:-12 D16563:-12 ENST00000460362.5:-14 CU677727:18 HQ448142:18 KJ890734:18 KJ896474:18 CR457403:19 ENST00000472202.1:21 BC020824:-21 ENST00000462760.1:-30 BC000931:-33 BC026049:40 ENST00000493053.5:-42 LF383674:-59 MA619251:-59 NM_005174:-85 NM_001320886:-85 |
TATA-Box annotation
| Distance to TSS: | 351 |
|---|---|
| Nearest PromoterID: | NM_001184823 |
| Entrez ID: | 7417 |
| Nearest Unigene: | Hs.355927 |
| Nearest Refseq: | NM_003375 |
| Nearest Ensembl: | ENSG00000165637 |
| Gene Name: | ATP synthase F1 subunit gamma |
| Gene Alias: | POR |
| Gene Description: | voltage dependent anion channel 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
