Difference between revisions of "TSS:Hg 103850.1"
From referenceTSS
| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans=ENST00000632065.1:-18 BC036391:-20 ENST00000542579.5:-54 NM_006561 | + | |all_trans=ENST00000632065.1:-18 BC036391:-20 ENST00000542579.5:-54 NM_006561:-54 ENST00000633077.1:-61 AK314087:-61 NM_001326343:-112 NM_001326342:-112 NM_001326341:-112 NM_001326340:-112 AF090694:112 U69546:148 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.19 | |cpg_percent=0.19 | ||
| Line 15: | Line 15: | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
|gene_id=10659 | |gene_id=10659 | ||
| − | |gene_name= | + | |gene_name=CUGBP Elav-like family member 2 |
|gene_source=HGNC:2550 | |gene_source=HGNC:2550 | ||
|gene_symbol=CELF2 | |gene_symbol=CELF2 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=11017983 | |start=11017983 | ||
| Line 37: | Line 37: | ||
|tss_id=hg_103850.1 | |tss_id=hg_103850.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A0J9YXJ0 |
}} | }} | ||
Revision as of 17:36, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11017989 |
|---|---|
| End of the center position in the TSS region: | 11017990 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000632065.1 |
|---|---|
| Distance: | -18 |
| Num_trans: | 12 |
| All_trans: | ENST00000632065.1:-18 BC036391:-20 ENST00000542579.5:-54 NM_006561:-54 ENST00000633077.1:-61 AK314087:-61 NM_001326343:-112 NM_001326342:-112 NM_001326341:-112 NM_001326340:-112 AF090694:112 U69546:148 |
TATA-Box annotation
| Distance to TSS: | 59 |
|---|---|
| Nearest PromoterID: | NM_006561 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.19 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
