Difference between revisions of "TSS:Hg 103861.1"
From referenceTSS
| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans=ENST00000608830.5 | + | |all_trans=ENST00000608830.5:8 AK293164:8 AF036956:-12 AK299992:-29 AK297313:-35 AF432906:46 ENST00000399850.7:-96 ENST00000417956.6:-96 NM_001083591:-96 NM_001025076:-96 AK316354:146 AK299983:-160 NM_001326348:-245 NM_001326349:-245 NM_001326347:-245 NM_001326346:-245 AK304216:324 ENST00000609870.5:352 ENST00000609692.5:352 AK310038:352 AK302681:352 ENST00000354897.3:354 AK295511:396 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 15: | Line 15: | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
|gene_id=10659 | |gene_id=10659 | ||
| − | |gene_name= | + | |gene_name=CUGBP Elav-like family member 2 |
|gene_source=HGNC:2550 | |gene_source=HGNC:2550 | ||
|gene_symbol=CELF2 | |gene_symbol=CELF2 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=11165125 | |start=11165125 | ||
|start_of_center_position=11165128 | |start_of_center_position=11165128 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000608830.5 | + | |transcript_name=ENST00000608830.5 AK293164 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103861.1 | |tss_id=hg_103861.1 | ||
Revision as of 17:36, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11165128 |
|---|---|
| End of the center position in the TSS region: | 11165129 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000608830.5 AK293164 |
|---|---|
| Distance: | 8 |
| Num_trans: | 23 |
| All_trans: | ENST00000608830.5:8 AK293164:8 AF036956:-12 AK299992:-29 AK297313:-35 AF432906:46 ENST00000399850.7:-96 ENST00000417956.6:-96 NM_001083591:-96 NM_001025076:-96 AK316354:146 AK299983:-160 NM_001326348:-245 NM_001326349:-245 NM_001326347:-245 NM_001326346:-245 AK304216:324 ENST00000609870.5:352 ENST00000609692.5:352 AK310038:352 AK302681:352 ENST00000354897.3:354 AK295511:396 |
TATA-Box annotation
| Distance to TSS: | 99 |
|---|---|
| Nearest PromoterID: | NM_001083591 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
