Difference between revisions of "TSS:Hg 103935.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000378764.6:-192 | + | |all_trans=ENST00000378764.6:-192 NM_001008213:261 NM_021980:261 NM_001008211:261 AK316171:315 AK303715:337 ENST00000487935.1:338 ENST00000482140.5:342 ENST00000378747.8:342 NM_001008212:342 ENST00000263036.9:-346 AK055403:-346 ENST00000378757.6:348 BC013876:348 ENST00000430081.5:352 ENST00000378752.7:352 ENST00000378748.7:352 BC032762:352 AF061034:389 AF420371:404 AF420372:404 AF420373:404 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=-192 | |distance=-192 | ||
| − | |distance_to_tss= | + | |distance_to_tss=181 |
|end=13099821 | |end=13099821 | ||
|end_of_center_position=13099808 | |end_of_center_position=13099808 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_031455 | |nearest_refseq=NM_031455 | ||
|nearest_unigene=Hs.498720 | |nearest_unigene=Hs.498720 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=13099794 | |start=13099794 | ||
|start_of_center_position=13099807 | |start_of_center_position=13099807 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000378764.6 | + | |transcript_name=ENST00000378764.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103935.1 | |tss_id=hg_103935.1 | ||
Revision as of 17:38, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 13099807 |
|---|---|
| End of the center position in the TSS region: | 13099808 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378764.6 |
|---|---|
| Distance: | -192 |
| Num_trans: | 22 |
| All_trans: | ENST00000378764.6:-192 NM_001008213:261 NM_021980:261 NM_001008211:261 AK316171:315 AK303715:337 ENST00000487935.1:338 ENST00000482140.5:342 ENST00000378747.8:342 NM_001008212:342 ENST00000263036.9:-346 AK055403:-346 ENST00000378757.6:348 BC013876:348 ENST00000430081.5:352 ENST00000378752.7:352 ENST00000378748.7:352 BC032762:352 AF061034:389 AF420371:404 AF420372:404 AF420373:404 |
TATA-Box annotation
| Distance to TSS: | 181 |
|---|---|
| Nearest PromoterID: | NM_001282658 |
| Entrez ID: | 83643 |
| Nearest Unigene: | Hs.498720 |
| Nearest Refseq: | NM_031455 |
| Nearest Ensembl: | ENSG00000151468 |
| Gene Name: | optineurin |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
