Difference between revisions of "TSS:Hg 103985.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HSP70L1= | |HSP70L1= | ||
| − | |all_trans=AK292323:-14 AF143723:-16 AB528152:19 AB587406 | + | |all_trans=AK292323:-14 AF143723:-16 KJ902567:19 AB528152:19 AB587406:19 KJ893846:19 BC119690:-25 BC119691:-25 AF112210:-25 ENST00000493178.1:-35 BC038845:-36 BC065281:-37 AK000880:-47 AK302452:-50 AK225265:-50 AK225651:-50 ENST00000441647.1:54 ENST00000640019.3:-60 ENST00000378372.8:-60 NM_001378785:-60 NM_016299:-60 NM_001378790:-60 ENST00000645667.1:-64 BC108738:-140 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=-14 | |distance=-14 | ||
| − | |distance_to_tss= | + | |distance_to_tss=68 |
|end=14838383 | |end=14838383 | ||
|end_of_center_position=14838375 | |end_of_center_position=14838375 | ||
|entrez_id=51182 | |entrez_id=51182 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=HSP70-4 | + | |gene_alias=HSP70-4{{!}}HSP70L1 |
|gene_description=heat shock protein family A (Hsp70) member 14 | |gene_description=heat shock protein family A (Hsp70) member 14 | ||
|gene_id=51182 | |gene_id=51182 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:29526 | |hgnc_mgi_id=HGNC:29526 | ||
|nearest_ensembl=ENSG00000187522 | |nearest_ensembl=ENSG00000187522 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016299 |
|nearest_refseq=NM_016299 | |nearest_refseq=NM_016299 | ||
|nearest_unigene=Hs.534169 | |nearest_unigene=Hs.534169 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=14838365 | |start=14838365 | ||
|start_of_center_position=14838374 | |start_of_center_position=14838374 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=75(CCGTCTATAAGG,-,0.00) |
|transcript_name=AK292323 | |transcript_name=AK292323 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:39, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 14838374 |
|---|---|
| End of the center position in the TSS region: | 14838375 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK292323 |
|---|---|
| Distance: | -14 |
| Num_trans: | 24 |
| All_trans: | AK292323:-14 AF143723:-16 KJ902567:19 AB528152:19 AB587406:19 KJ893846:19 BC119690:-25 BC119691:-25 AF112210:-25 ENST00000493178.1:-35 BC038845:-36 BC065281:-37 AK000880:-47 AK302452:-50 AK225265:-50 AK225651:-50 ENST00000441647.1:54 ENST00000640019.3:-60 ENST00000378372.8:-60 NM_001378785:-60 NM_016299:-60 NM_001378790:-60 ENST00000645667.1:-64 BC108738:-140 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_016299 |
| Entrez ID: | 51182 |
| Nearest Unigene: | Hs.534169 |
| Nearest Refseq: | NM_016299 |
| Nearest Ensembl: | ENSG00000187522 |
| Gene Name: | heat shock protein family A (Hsp70) member 14 |
| Gene Alias: | HSP70-4|HSP70L1 |
| Gene Description: | heat shock protein family A (Hsp70) member 14 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 75(CCGTCTATAAGG,-,0.00) |
