Difference between revisions of "TSS:Hg 224229.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HEL113= | |HEL113= | ||
| − | |all_trans=ENST00000224237.9:156 ENST00000487938.5:156 | + | |all_trans=ENST00000224237.9:156 ENST00000487938.5:156 AK222507:156 AK222602:156 EU794672:156 AK056766:156 AK091813:156 AK097336:156 AK098444:156 X16478:157 AK222482:158 LF205547:-167 MA441124:-167 ENST00000485947.1:169 AF328728:173 BC030573:177 BC000163:177 GQ900939:177 Z19554:182 ENST00000497849.1:-218 LF346167:256 MA581744:256 X56134:258 AK290643:276 AB590763:298 CU674070:300 KJ892377:300 CR407690:301 KU178388:301 KU178389:301 LF346169:384 MA581746:384 LF346170:490 MA581747:490 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=156 | |distance=156 | ||
| − | |distance_to_tss= | + | |distance_to_tss=863 |
|end=17229122 | |end=17229122 | ||
|end_of_center_position=17229105 | |end_of_center_position=17229105 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=vimentin | |gene_description=vimentin | ||
|gene_id=7431 | |gene_id=7431 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003380 | |nearest_refseq=NM_003380 | ||
|nearest_unigene=Hs.455493 | |nearest_unigene=Hs.455493 | ||
| − | |num_trans= | + | |num_trans=34 |
|species=human | |species=human | ||
|start=17229086 | |start=17229086 | ||
|start_of_center_position=17229104 | |start_of_center_position=17229104 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000224237.9 ENST00000487938.5 | + | |transcript_name=ENST00000224237.9 ENST00000487938.5 AK222507 AK222602 EU794672 AK056766 AK091813 AK097336 AK098444 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_224229.1 | |tss_id=hg_224229.1 | ||
Revision as of 09:15, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17229104 |
|---|---|
| End of the center position in the TSS region: | 17229105 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000224237.9 ENST00000487938.5 AK222507 AK222602 EU794672 AK056766 AK091813 AK097336 AK098444 |
|---|---|
| Distance: | 156 |
| Num_trans: | 34 |
| All_trans: | ENST00000224237.9:156 ENST00000487938.5:156 AK222507:156 AK222602:156 EU794672:156 AK056766:156 AK091813:156 AK097336:156 AK098444:156 X16478:157 AK222482:158 LF205547:-167 MA441124:-167 ENST00000485947.1:169 AF328728:173 BC030573:177 BC000163:177 GQ900939:177 Z19554:182 ENST00000497849.1:-218 LF346167:256 MA581744:256 X56134:258 AK290643:276 AB590763:298 CU674070:300 KJ892377:300 CR407690:301 KU178388:301 KU178389:301 LF346169:384 MA581746:384 LF346170:490 MA581747:490 |
TATA-Box annotation
| Distance to TSS: | 863 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
