Difference between revisions of "TSS:Hg 104079.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF346189:-47 MA581766:-47 LF346188:-130 MA581765:-130 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-47 |
|distance_to_tss=-7421 | |distance_to_tss=-7421 | ||
|end=17237426 | |end=17237426 | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=17237386 | |start=17237386 | ||
|start_of_center_position=17237406 | |start_of_center_position=17237406 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=88(CTTTTTAAAAGG,+,0.00),88(CTTTTTAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF346189 MA581766 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104079.1 | |tss_id=hg_104079.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:42, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17237406 |
|---|---|
| End of the center position in the TSS region: | 17237407 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF346189 MA581766 |
|---|---|
| Distance: | -47 |
| Num_trans: | 4 |
| All_trans: | LF346189:-47 MA581766:-47 LF346188:-130 MA581765:-130 |
TATA-Box annotation
| Distance to TSS: | -7421 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | VIM-AS1 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.318408 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 88(CTTTTTAAAAGG,+,0.00),88(CTTTTTAAAAGG,-,0.00) |
