Difference between revisions of "TSS:Hg 104088.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000451225.2 | + | |all_trans=ENST00000451225.2:2 BC029655:-17 ENST00000377597.6:-34 AK127982:-34 ENST00000457649.6:-49 ENST00000657045.1:-49 NR_034129:-49 BC054478:-49 ENST00000451190.3:-66 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:44880 | |gene_source=HGNC:44880 | ||
|gene_symbol=ST8SIA6-AS1 | |gene_symbol=ST8SIA6-AS1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=APAL |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:44880 | |hgnc_mgi_id=HGNC:44880 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_034129 | |nearest_refseq=NR_034129 | ||
|nearest_unigene=Hs.530588 | |nearest_unigene=Hs.530588 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=17386984 | |start=17386984 | ||
|start_of_center_position=17386988 | |start_of_center_position=17386988 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000451225.2 | + | |transcript_name=ENST00000451225.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104088.1 | |tss_id=hg_104088.1 | ||
Revision as of 17:42, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17386988 |
|---|---|
| End of the center position in the TSS region: | 17386989 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000451225.2 |
|---|---|
| Distance: | 2 |
| Num_trans: | 9 |
| All_trans: | ENST00000451225.2:2 BC029655:-17 ENST00000377597.6:-34 AK127982:-34 ENST00000457649.6:-49 ENST00000657045.1:-49 NR_034129:-49 BC054478:-49 ENST00000451190.3:-66 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NR_034129 |
| Entrez ID: | 100128098 |
| Nearest Unigene: | Hs.530588 |
| Nearest Refseq: | NR_034129 |
| Nearest Ensembl: | ENSG00000204832 |
| Gene Name: | ST8SIA6 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | ST8SIA6 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
