Difference between revisions of "TSS:Hg 104117.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CAVB2= | |CAVB2= | ||
|MYSB= | |MYSB= | ||
| − | |all_trans=ENST00000352115.10:0 ENST00000377328.5 | + | |all_trans=ENST00000352115.10:0 ENST00000377328.5:0 KJ896530:0 AF137376:0 AF423191:0 AY393860:0 AY675091:0 ENST00000468177.1:6 BC136409:-16 AK296471:29 ENST00000467034.1:51 AK311694:51 S60415:-53 ENST00000643096.2:72 ENST00000645287.1:72 AK307526:72 ENST00000644004.1:140 AK293837:140 ENST00000282343.13:217 ENST00000324631.13:-306 NM_001167945:-306 NM_201572:-306 NM_201571:-306 NM_201597:-306 NM_201593:-306 NM_201596:-306 AF423190:439 AY393858:439 AY393861:439 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=311 |
|end=18140741 | |end=18140741 | ||
|end_of_center_position=18140736 | |end_of_center_position=18140736 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=CACNLB2 | + | |gene_alias=CACNLB2{{!}}CAVB2{{!}}MYSB |
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
|gene_id=783 | |gene_id=783 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1402 | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_201593 |
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=18140729 | |start=18140729 | ||
|start_of_center_position=18140735 | |start_of_center_position=18140735 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000352115.10 ENST00000377328.5 | + | |transcript_name=ENST00000352115.10 ENST00000377328.5 KJ896530 AF137376 AF423191 AY393860 AY675091 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104117.1 | |tss_id=hg_104117.1 | ||
Revision as of 17:42, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18140735 |
|---|---|
| End of the center position in the TSS region: | 18140736 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000352115.10 ENST00000377328.5 KJ896530 AF137376 AF423191 AY393860 AY675091 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000352115.10:0 ENST00000377328.5:0 KJ896530:0 AF137376:0 AF423191:0 AY393860:0 AY675091:0 ENST00000468177.1:6 BC136409:-16 AK296471:29 ENST00000467034.1:51 AK311694:51 S60415:-53 ENST00000643096.2:72 ENST00000645287.1:72 AK307526:72 ENST00000644004.1:140 AK293837:140 ENST00000282343.13:217 ENST00000324631.13:-306 NM_001167945:-306 NM_201572:-306 NM_201571:-306 NM_201597:-306 NM_201593:-306 NM_201596:-306 AF423190:439 AY393858:439 AY393861:439 |
TATA-Box annotation
| Distance to TSS: | 311 |
|---|---|
| Nearest PromoterID: | NM_201593 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2|CAVB2|MYSB |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
