Difference between revisions of "TSS:Hg 232203.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000643096.2:-31 ENST00000645287.1:-31 AK307526:-31 ENST00000644004.1:37 AK293837:37 ENST00000467034.1:-52 AK311694:-52 AK296471:-74 ENST00000468177.1:-97 ENST00000352115.10:-107 ENST00000377328.5:-107 AF423191:-107 AY393860:-107 AY675091:-107 AF137376:-108 KJ896530:-109 ENST00000282343.13:114 BC136409:-130 S60415:-167 AF423190:336 AY393858:336 AY393861:336 ENST00000324631.13:-420 NM_001167945:-420 NM_201572:-420 NM_201571:-420 NM_201597:-420 NM_201593:-420 NM_201596:-420 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-31 |
|distance_to_tss=-6388 | |distance_to_tss=-6388 | ||
|end=17236379 | |end=17236379 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=VIM antisense RNA 1 | |gene_description=VIM antisense RNA 1 | ||
| − | |gene_id= | + | |gene_id=783 |
| − | |gene_name= | + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1402 |
| − | |gene_symbol= | + | |gene_symbol=CACNB2 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1402 |
|nearest_ensembl=ENSG00000229124 | |nearest_ensembl=ENSG00000229124 | ||
|nearest_promoter_id=NR_108061 | |nearest_promoter_id=NR_108061 | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=17236367 | |start=17236367 | ||
|start_of_center_position=18140843 | |start_of_center_position=18140843 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=14(TCTTTTAAGGAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000643096.2 ENST00000645287.1 AK307526 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232203.1 | |tss_id=hg_232203.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y555 Q08289 |
}} | }} | ||
Revision as of 12:19, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18140843 |
|---|---|
| End of the center position in the TSS region: | 18140844 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000643096.2 ENST00000645287.1 AK307526 |
|---|---|
| Distance: | -31 |
| Num_trans: | 29 |
| All_trans: | ENST00000643096.2:-31 ENST00000645287.1:-31 AK307526:-31 ENST00000644004.1:37 AK293837:37 ENST00000467034.1:-52 AK311694:-52 AK296471:-74 ENST00000468177.1:-97 ENST00000352115.10:-107 ENST00000377328.5:-107 AF423191:-107 AY393860:-107 AY675091:-107 AF137376:-108 KJ896530:-109 ENST00000282343.13:114 BC136409:-130 S60415:-167 AF423190:336 AY393858:336 AY393861:336 ENST00000324631.13:-420 NM_001167945:-420 NM_201572:-420 NM_201571:-420 NM_201597:-420 NM_201593:-420 NM_201596:-420 |
TATA-Box annotation
| Distance to TSS: | -6388 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 14(TCTTTTAAGGAA,+,0.00) |
