Difference between revisions of "TSS:Hg 104235.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000417470 | + | |all_trans=ENST00000417470.1:-16 ENST00000448361.5:-23 ENST00000463688.6:-27 ENST00000463409.6:-36 ENST00000489125.2:-37 ENST00000496071.5:-39 ENST00000472610.5:-40 ENST00000444869.5:-48 AY542159:-50 ENST00000456711.5:-51 ENST00000470045.1:-53 AK295109:-53 KJ893368:-54 ENST00000479958.6:-59 ENST00000602390.5:-59 AF078848:-59 AK128789:-59 AK313235:-59 ENST00000468179.6:-69 BC022898:-72 AF201948:-79 ENST00000376836.8:-80 ENST00000475460.6:-80 NM_012071:-80 ENST00000602574.5:-82 BX647275:-82 NM_001204062:-85 ENST00000468469.5:256 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-16 | |distance=-16 | ||
| − | |distance_to_tss= | + | |distance_to_tss=85 |
|end=22316479 | |end=22316479 | ||
|end_of_center_position=22316474 | |end_of_center_position=22316474 | ||
| − | |entrez_id= | + | |entrez_id=23412 |
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias= | + | |gene_alias=BUP{{!}}C10orf8 |
| − | |gene_description= | + | |gene_description=COMM domain containing 3 |
|gene_id=100532731 | |gene_id=100532731 | ||
|gene_name=COMMD3-BMI1 readthrough | |gene_name=COMMD3-BMI1 readthrough | ||
| Line 18: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:48326 | |hgnc_mgi_id=HGNC:48326 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000148444 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_012071 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_012071 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.534398 |
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=22316467 | |start=22316467 | ||
|start_of_center_position=22316473 | |start_of_center_position=22316473 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000417470 | + | |transcript_name=ENST00000417470.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104235.1 | |tss_id=hg_104235.1 | ||
Revision as of 17:45, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 22316473 |
|---|---|
| End of the center position in the TSS region: | 22316474 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000417470.1 |
|---|---|
| Distance: | -16 |
| Num_trans: | 28 |
| All_trans: | ENST00000417470.1:-16 ENST00000448361.5:-23 ENST00000463688.6:-27 ENST00000463409.6:-36 ENST00000489125.2:-37 ENST00000496071.5:-39 ENST00000472610.5:-40 ENST00000444869.5:-48 AY542159:-50 ENST00000456711.5:-51 ENST00000470045.1:-53 AK295109:-53 KJ893368:-54 ENST00000479958.6:-59 ENST00000602390.5:-59 AF078848:-59 AK128789:-59 AK313235:-59 ENST00000468179.6:-69 BC022898:-72 AF201948:-79 ENST00000376836.8:-80 ENST00000475460.6:-80 NM_012071:-80 ENST00000602574.5:-82 BX647275:-82 NM_001204062:-85 ENST00000468469.5:256 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_012071 |
| Entrez ID: | 23412 |
| Nearest Unigene: | Hs.534398 |
| Nearest Refseq: | NM_012071 |
| Nearest Ensembl: | ENSG00000148444 |
| Gene Name: | COMMD3-BMI1 readthrough |
| Gene Alias: | BUP|C10orf8 |
| Gene Description: | COMM domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
