Difference between revisions of "TSS:Hg 104236.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000417470 | + | |all_trans=ENST00000417470.1:-57 ENST00000448361.5:-64 ENST00000463688.6:-68 ENST00000463409.6:-77 ENST00000489125.2:-78 ENST00000496071.5:-80 ENST00000472610.5:-81 ENST00000444869.5:-89 AY542159:-91 ENST00000456711.5:-92 ENST00000470045.1:-94 AK295109:-94 KJ893368:-95 ENST00000479958.6:-100 ENST00000602390.5:-100 AF078848:-100 AK128789:-100 AK313235:-100 ENST00000468179.6:-110 BC022898:-113 AF201948:-120 ENST00000376836.8:-121 ENST00000475460.6:-121 NM_012071:-121 ENST00000602574.5:-123 BX647275:-123 NM_001204062:-126 ENST00000468469.5:218 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=-57 | |distance=-57 | ||
| − | |distance_to_tss= | + | |distance_to_tss=125 |
|end=22316517 | |end=22316517 | ||
|end_of_center_position=22316513 | |end_of_center_position=22316513 | ||
| − | |entrez_id= | + | |entrez_id=23412 |
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias= | + | |gene_alias=BUP{{!}}C10orf8 |
| − | |gene_description= | + | |gene_description=COMM domain containing 3 |
|gene_id=100532731 | |gene_id=100532731 | ||
|gene_name=COMMD3-BMI1 readthrough | |gene_name=COMMD3-BMI1 readthrough | ||
| Line 18: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:48326 | |hgnc_mgi_id=HGNC:48326 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000148444 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_012071 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_012071 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.534398 |
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=22316508 | |start=22316508 | ||
|start_of_center_position=22316512 | |start_of_center_position=22316512 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000417470 | + | |transcript_name=ENST00000417470.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104236.1 | |tss_id=hg_104236.1 | ||
Revision as of 17:45, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 22316512 |
|---|---|
| End of the center position in the TSS region: | 22316513 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000417470.1 |
|---|---|
| Distance: | -57 |
| Num_trans: | 28 |
| All_trans: | ENST00000417470.1:-57 ENST00000448361.5:-64 ENST00000463688.6:-68 ENST00000463409.6:-77 ENST00000489125.2:-78 ENST00000496071.5:-80 ENST00000472610.5:-81 ENST00000444869.5:-89 AY542159:-91 ENST00000456711.5:-92 ENST00000470045.1:-94 AK295109:-94 KJ893368:-95 ENST00000479958.6:-100 ENST00000602390.5:-100 AF078848:-100 AK128789:-100 AK313235:-100 ENST00000468179.6:-110 BC022898:-113 AF201948:-120 ENST00000376836.8:-121 ENST00000475460.6:-121 NM_012071:-121 ENST00000602574.5:-123 BX647275:-123 NM_001204062:-126 ENST00000468469.5:218 |
TATA-Box annotation
| Distance to TSS: | 125 |
|---|---|
| Nearest PromoterID: | NM_012071 |
| Entrez ID: | 23412 |
| Nearest Unigene: | Hs.534398 |
| Nearest Refseq: | NM_012071 |
| Nearest Ensembl: | ENSG00000148444 |
| Gene Name: | COMMD3-BMI1 readthrough |
| Gene Alias: | BUP|C10orf8 |
| Gene Description: | COMM domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
