Difference between revisions of "TSS:Hg 104261.1"
From referenceTSS
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100499489 | |gene_description=uncharacterized LOC100499489 | ||
| − | |gene_id= | + | |gene_id= |
| − | |gene_name= | + | |gene_name=LOC100499489 |
|gene_source=EntrezGene:100289455 | |gene_source=EntrezGene:100289455 | ||
|gene_symbol=LOC100289455 | |gene_symbol=LOC100289455 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=22437006 | |start_of_center_position=22437006 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-50(GGCTCTATAAAG,-,0.00),-48(CTCTATAAAGCC,+,0.00),-34(GGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00) |
|transcript_name=AK295718 | |transcript_name=AK295718 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:46, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 22437006 |
|---|---|
| End of the center position in the TSS region: | 22437007 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK295718 |
|---|---|
| Distance: | 68 |
| Num_trans: | 1 |
| All_trans: | AK295718:68 |
TATA-Box annotation
| Distance to TSS: | 922 |
|---|---|
| Nearest PromoterID: | NR_036533 |
| Entrez ID: | 100499489 |
| Nearest Unigene: | Hs.7444 |
| Nearest Refseq: | NR_036533 |
| Nearest Ensembl: | |
| Gene Name: | LOC100499489 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100499489 |
| Gene Type: | ncRNA |
| CpG%: | 0.135 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -50(GGCTCTATAAAG,-,0.00),-48(CTCTATAAAGCC,+,0.00),-34(GGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00) |
