Difference between revisions of "TSS:Hg 104270.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|KU-CT-1= | |KU-CT-1= | ||
| − | |all_trans=ENST00000447081.5:0 ENST00000468003.5:0 ENST00000483596.5 | + | |all_trans=ENST00000447081.5:0 ENST00000468003.5:0 ENST00000483596.5:0 AK057389:0 ENST00000496741.5:-3 ENST00000484642.5:-3 AK302104:-3 ENST00000409049.7:-16 AY436643:-16 ENST00000298032.10:-27 NM_001282746:-27 NM_001282745:-27 NM_173081:-27 ENST00000409983.7:-43 AK302985:-43 BC039312:-49 ENST00000376528.8:-56 NM_001282747:-56 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=31 |
|end=22928089 | |end=22928089 | ||
|end_of_center_position=22928085 | |end_of_center_position=22928085 | ||
|entrez_id=219681 | |entrez_id=219681 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=CT81 | + | |gene_alias=CT81{{!}}KU-CT-1 |
|gene_description=armadillo repeat containing 3 | |gene_description=armadillo repeat containing 3 | ||
|gene_id=219681 | |gene_id=219681 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:30964 | |hgnc_mgi_id=HGNC:30964 | ||
|nearest_ensembl=ENSG00000165309 | |nearest_ensembl=ENSG00000165309 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282745 |
|nearest_refseq=NM_173081 | |nearest_refseq=NM_173081 | ||
|nearest_unigene=Hs.659807 | |nearest_unigene=Hs.659807 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=22928079 | |start=22928079 | ||
|start_of_center_position=22928084 | |start_of_center_position=22928084 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000447081.5 ENST00000468003.5 ENST00000483596.5 | + | |transcript_name=ENST00000447081.5 ENST00000468003.5 ENST00000483596.5 AK057389 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104270.1 | |tss_id=hg_104270.1 | ||
Revision as of 17:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22928084 |
|---|---|
| End of the center position in the TSS region: | 22928085 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000447081.5 ENST00000468003.5 ENST00000483596.5 AK057389 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000447081.5:0 ENST00000468003.5:0 ENST00000483596.5:0 AK057389:0 ENST00000496741.5:-3 ENST00000484642.5:-3 AK302104:-3 ENST00000409049.7:-16 AY436643:-16 ENST00000298032.10:-27 NM_001282746:-27 NM_001282745:-27 NM_173081:-27 ENST00000409983.7:-43 AK302985:-43 BC039312:-49 ENST00000376528.8:-56 NM_001282747:-56 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_001282745 |
| Entrez ID: | 219681 |
| Nearest Unigene: | Hs.659807 |
| Nearest Refseq: | NM_173081 |
| Nearest Ensembl: | ENSG00000165309 |
| Gene Name: | armadillo repeat containing 3 |
| Gene Alias: | CT81|KU-CT-1 |
| Gene Description: | armadillo repeat containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
