Difference between revisions of "TSS:Hg 232213.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Repro-SA-1= | |Repro-SA-1= | ||
| − | |all_trans= | + | |all_trans=AB463998:60 BC172252:60 BC172557:60 ENST00000638469.1:94 ENST00000376504.4:-158 NM_178161:-158 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=60 |
| − | |distance_to_tss= | + | |distance_to_tss=41162 |
|end=22386658 | |end=22386658 | ||
|end_of_center_position=23192470 | |end_of_center_position=23192470 | ||
|entrez_id=9576 | |entrez_id=9576 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias=CT141 | + | |gene_alias=CT141{{!}}Repro-SA-1{{!}}pf16 |
|gene_description=sperm associated antigen 6 | |gene_description=sperm associated antigen 6 | ||
| − | |gene_id= | + | |gene_id=256297 |
| − | |gene_name= | + | |gene_name=pancreas associated transcription factor 1a |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:23734 |
| − | |gene_symbol= | + | |gene_symbol=PTF1A |
| − | |gene_synonyms= | + | |gene_synonyms=PTF1-p48 bHLHa29 p48 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:23734 |
|nearest_ensembl=ENSG00000077327 | |nearest_ensembl=ENSG00000077327 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_172242 |
|nearest_refseq=NM_012443 | |nearest_refseq=NM_012443 | ||
|nearest_unigene=Hs.655170 | |nearest_unigene=Hs.655170 | ||
| − | |num_trans= | + | |num_trans=6 |
|pf16= | |pf16= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=23192469 | |start_of_center_position=23192469 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AB463998 BC172252 BC172557 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232213.1 | |tss_id=hg_232213.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:19, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23192469 |
|---|---|
| End of the center position in the TSS region: | 23192470 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB463998 BC172252 BC172557 |
|---|---|
| Distance: | 60 |
| Num_trans: | 6 |
| All_trans: | AB463998:60 BC172252:60 BC172557:60 ENST00000638469.1:94 ENST00000376504.4:-158 NM_178161:-158 |
TATA-Box annotation
| Distance to TSS: | 41162 |
|---|---|
| Nearest PromoterID: | NM_172242 |
| Entrez ID: | 9576 |
| Nearest Unigene: | Hs.655170 |
| Nearest Refseq: | NM_012443 |
| Nearest Ensembl: | ENSG00000077327 |
| Gene Name: | pancreas associated transcription factor 1a |
| Gene Alias: | CT141|Repro-SA-1|pf16 |
| Gene Description: | sperm associated antigen 6 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
