Difference between revisions of "TSS:Hg 104289.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OTDC1= | |OTDC1= | ||
| − | |all_trans=ENST00000376495. | + | |all_trans=AB188491:-183 ENST00000376495.5:-377 NM_001145373:-377 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=-183 |
|distance_to_tss=191 | |distance_to_tss=191 | ||
|end=23439468 | |end=23439468 | ||
| Line 10: | Line 10: | ||
|entrez_id=220213 | |entrez_id=220213 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=DUBA7 | + | |gene_alias=DUBA7{{!}}OTDC1 |
|gene_description=OTU deubiquitinase 1 | |gene_description=OTU deubiquitinase 1 | ||
|gene_id=220213 | |gene_id=220213 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001145373 | |nearest_refseq=NM_001145373 | ||
|nearest_unigene=Hs.499042 | |nearest_unigene=Hs.499042 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=23439451 | |start=23439451 | ||
|start_of_center_position=23439459 | |start_of_center_position=23439459 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(GCGCCTATAAGG,-,0.00),-33(GCCTATAAGGGG,+,0.00),-33(GCCTATAAGGGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AB188491 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104289.1 | |tss_id=hg_104289.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:47, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23439459 |
|---|---|
| End of the center position in the TSS region: | 23439460 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB188491 |
|---|---|
| Distance: | -183 |
| Num_trans: | 3 |
| All_trans: | AB188491:-183 ENST00000376495.5:-377 NM_001145373:-377 |
TATA-Box annotation
| Distance to TSS: | 191 |
|---|---|
| Nearest PromoterID: | NM_001145373 |
| Entrez ID: | 220213 |
| Nearest Unigene: | Hs.499042 |
| Nearest Refseq: | NM_001145373 |
| Nearest Ensembl: | ENSG00000165312 |
| Gene Name: | OTU deubiquitinase 1 |
| Gene Alias: | DUBA7|OTDC1 |
| Gene Description: | OTU deubiquitinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GCGCCTATAAGG,-,0.00),-33(GCCTATAAGGGG,+,0.00),-33(GCCTATAAGGGG,-,0.00) |
