Difference between revisions of "TSS:Hg 104311.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000376456.8:-105 ENST00000458595.5:-105 ENST00000376452.7:-105 ENST00000430453.6 | + | |all_trans=ENST00000376456.8:-105 ENST00000458595.5:-105 ENST00000376452.7:-105 ENST00000430453.6:-105 NM_001282767:-105 NM_001282768:-105 AK091142:-105 ENST00000376454.8:203 NM_019590:203 AL833280:229 ENST00000635504.1:232 BC136521:238 BC144227:238 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 9: | Line 9: | ||
|entrez_id=56243 | |entrez_id=56243 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=SKT | + | |gene_alias=ETL4{{!}}SKT |
|gene_description=KIAA1217 | |gene_description=KIAA1217 | ||
|gene_id=56243 | |gene_id=56243 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:25428 | |gene_source=HGNC:25428 | ||
|gene_symbol=KIAA1217 | |gene_symbol=KIAA1217 | ||
| − | |gene_synonyms=DKFZP761L0424 SKT | + | |gene_synonyms=DKFZP761L0424 ETL4 SKT |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25428 | |hgnc_mgi_id=HGNC:25428 | ||
|nearest_ensembl=ENSG00000120549 | |nearest_ensembl=ENSG00000120549 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282767 |
|nearest_refseq=NM_019590 | |nearest_refseq=NM_019590 | ||
|nearest_unigene=Hs.445885 | |nearest_unigene=Hs.445885 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=24208895 | |start=24208895 | ||
|start_of_center_position=24208915 | |start_of_center_position=24208915 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000376456.8 ENST00000458595.5 ENST00000376452.7 ENST00000430453.6 NM_001282768 | + | |transcript_name=ENST00000376456.8 ENST00000458595.5 ENST00000376452.7 ENST00000430453.6 NM_001282767 NM_001282768 AK091142 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104311.1 | |tss_id=hg_104311.1 | ||
Revision as of 17:47, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24208915 |
|---|---|
| End of the center position in the TSS region: | 24208916 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376456.8 ENST00000458595.5 ENST00000376452.7 ENST00000430453.6 NM_001282767 NM_001282768 AK091142 |
|---|---|
| Distance: | -105 |
| Num_trans: | 13 |
| All_trans: | ENST00000376456.8:-105 ENST00000458595.5:-105 ENST00000376452.7:-105 ENST00000430453.6:-105 NM_001282767:-105 NM_001282768:-105 AK091142:-105 ENST00000376454.8:203 NM_019590:203 AL833280:229 ENST00000635504.1:232 BC136521:238 BC144227:238 |
TATA-Box annotation
| Distance to TSS: | 124 |
|---|---|
| Nearest PromoterID: | NM_001282767 |
| Entrez ID: | 56243 |
| Nearest Unigene: | Hs.445885 |
| Nearest Refseq: | NM_019590 |
| Nearest Ensembl: | ENSG00000120549 |
| Gene Name: | KIAA1217 |
| Gene Alias: | ETL4|SKT |
| Gene Description: | KIAA1217 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
