Difference between revisions of "TSS:Hg 104320.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000438429.5 | + | |all_trans=ENST00000438429.5:-316 AK096446:-316 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-316 | |distance=-316 | ||
| − | |distance_to_tss= | + | |distance_to_tss=30375 |
|end=24239516 | |end=24239516 | ||
|end_of_center_position=24239514 | |end_of_center_position=24239514 | ||
|entrez_id=56243 | |entrez_id=56243 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias=SKT | + | |gene_alias=ETL4{{!}}SKT |
|gene_description=KIAA1217 | |gene_description=KIAA1217 | ||
|gene_id=56243 | |gene_id=56243 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:25428 | |gene_source=HGNC:25428 | ||
|gene_symbol=KIAA1217 | |gene_symbol=KIAA1217 | ||
| − | |gene_synonyms=DKFZP761L0424 SKT | + | |gene_synonyms=DKFZP761L0424 ETL4 SKT |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25428 | |hgnc_mgi_id=HGNC:25428 | ||
|nearest_ensembl=ENSG00000120549 | |nearest_ensembl=ENSG00000120549 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_019590 |
|nearest_refseq=NM_019590 | |nearest_refseq=NM_019590 | ||
|nearest_unigene=Hs.445885 | |nearest_unigene=Hs.445885 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=24239510 | |start=24239510 | ||
|start_of_center_position=24239513 | |start_of_center_position=24239513 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-31(CTGTTTTTAAGG,-,0.00),-29(GTTTTTAAGGGC,+,0.00),79(TGCTATAAAAGT,-,0.00) |
| − | |transcript_name=ENST00000438429.5 | + | |transcript_name=ENST00000438429.5 AK096446 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104320.1 | |tss_id=hg_104320.1 | ||
Revision as of 17:47, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24239513 |
|---|---|
| End of the center position in the TSS region: | 24239514 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000438429.5 AK096446 |
|---|---|
| Distance: | -316 |
| Num_trans: | 2 |
| All_trans: | ENST00000438429.5:-316 AK096446:-316 |
TATA-Box annotation
| Distance to TSS: | 30375 |
|---|---|
| Nearest PromoterID: | NM_019590 |
| Entrez ID: | 56243 |
| Nearest Unigene: | Hs.445885 |
| Nearest Refseq: | NM_019590 |
| Nearest Ensembl: | ENSG00000120549 |
| Gene Name: | KIAA1217 |
| Gene Alias: | ETL4|SKT |
| Gene Description: | KIAA1217 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(CTGTTTTTAAGG,-,0.00),-29(GTTTTTAAGGGC,+,0.00),79(TGCTATAAAAGT,-,0.00) |
