Difference between revisions of "TSS:Hg 104392.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC047899:0 BC039038:0 ENST00000259271.7 | + | |all_trans=BC047899:0 BC039038:0 ENST00000259271.7:137 M74826:137 NM_000818:-152 ENST00000428517.2:205 BC029517:205 M81882:230 ENST00000376261.8:246 NM_001134366:246 BC126327:257 BC126329:257 AB527954:282 HQ258311:282 X69936:297 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4093 | |hgnc_mgi_id=HGNC:4093 | ||
|nearest_ensembl=ENSG00000136750 | |nearest_ensembl=ENSG00000136750 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000818 |
|nearest_refseq=NM_000818 | |nearest_refseq=NM_000818 | ||
|nearest_unigene=Hs.231829 | |nearest_unigene=Hs.231829 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=26216458 | |start=26216458 | ||
|start_of_center_position=26216493 | |start_of_center_position=26216493 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=65(CTCTTTTAAAGC,-,0.00),66(TCTTTTAAAGCT,+,0.00) |
|transcript_name=BC047899 BC039038 | |transcript_name=BC047899 BC039038 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:49, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 26216493 |
|---|---|
| End of the center position in the TSS region: | 26216494 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC047899 BC039038 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | BC047899:0 BC039038:0 ENST00000259271.7:137 M74826:137 NM_000818:-152 ENST00000428517.2:205 BC029517:205 M81882:230 ENST00000376261.8:246 NM_001134366:246 BC126327:257 BC126329:257 AB527954:282 HQ258311:282 X69936:297 |
TATA-Box annotation
| Distance to TSS: | 186 |
|---|---|
| Nearest PromoterID: | NM_000818 |
| Entrez ID: | 2572 |
| Nearest Unigene: | Hs.231829 |
| Nearest Refseq: | NM_000818 |
| Nearest Ensembl: | ENSG00000136750 |
| Gene Name: | glutamate decarboxylase 2 |
| Gene Alias: | GAD65 |
| Gene Description: | glutamate decarboxylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 65(CTCTTTTAAAGC,-,0.00),66(TCTTTTAAAGCT,+,0.00) |
