Difference between revisions of "TSS:Hg 104455.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WARBM3= | |WARBM3= | ||
| − | |all_trans=AK223153:1 ENST00000375802.7 | + | |all_trans=AK223153:1 ENST00000375802.7:-3 AL136734:-9 AF274957:9 BC015014:-11 AF087860:-15 ENST00000621805.4:24 AF136974:-24 AB464117:24 AM393142:24 BT009840:24 CU677165:24 AF498950:24 CR533455:24 AF137372:24 AK001555:24 ENST00000356940.11:-27 NM_021252:-27 NM_001256415:-27 NM_001256412:-27 NM_001256411:-27 NM_001256410:-27 NR_046172:-27 AK297629:-27 AK299457:-27 AK295443:-27 BC029350:-27 ENST00000465772.5:31 ENST00000490236.2:-32 AY574034:-45 ENST00000484281.1:48 LP895194:-63 ENST00000535776.5:-157 ENST00000611151.4:-157 ENST00000423465.1:273 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=1 | |distance=1 | ||
| − | |distance_to_tss= | + | |distance_to_tss=34 |
|end=27504346 | |end=27504346 | ||
|end_of_center_position=27504339 | |end_of_center_position=27504339 | ||
|entrez_id=22931 | |entrez_id=22931 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=RAB18LI1 | + | |gene_alias=RAB18LI1{{!}}WARBM3 |
| − | |gene_description= | + | |gene_description=RAB18, member RAS oncogene family |
|gene_id=22931 | |gene_id=22931 | ||
| − | |gene_name= | + | |gene_name=RAB18, member RAS oncogene family |
|gene_source=HGNC:14244 | |gene_source=HGNC:14244 | ||
|gene_symbol=RAB18 | |gene_symbol=RAB18 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:14244 | |hgnc_mgi_id=HGNC:14244 | ||
|nearest_ensembl=ENSG00000099246 | |nearest_ensembl=ENSG00000099246 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_046172 |
|nearest_refseq=NM_021252 | |nearest_refseq=NM_021252 | ||
|nearest_unigene=Hs.406799 | |nearest_unigene=Hs.406799 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=27504330 | |start=27504330 | ||
Revision as of 17:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27504338 |
|---|---|
| End of the center position in the TSS region: | 27504339 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK223153 |
|---|---|
| Distance: | 1 |
| Num_trans: | 35 |
| All_trans: | AK223153:1 ENST00000375802.7:-3 AL136734:-9 AF274957:9 BC015014:-11 AF087860:-15 ENST00000621805.4:24 AF136974:-24 AB464117:24 AM393142:24 BT009840:24 CU677165:24 AF498950:24 CR533455:24 AF137372:24 AK001555:24 ENST00000356940.11:-27 NM_021252:-27 NM_001256415:-27 NM_001256412:-27 NM_001256411:-27 NM_001256410:-27 NR_046172:-27 AK297629:-27 AK299457:-27 AK295443:-27 BC029350:-27 ENST00000465772.5:31 ENST00000490236.2:-32 AY574034:-45 ENST00000484281.1:48 LP895194:-63 ENST00000535776.5:-157 ENST00000611151.4:-157 ENST00000423465.1:273 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NR_046172 |
| Entrez ID: | 22931 |
| Nearest Unigene: | Hs.406799 |
| Nearest Refseq: | NM_021252 |
| Nearest Ensembl: | ENSG00000099246 |
| Gene Name: | RAB18, member RAS oncogene family |
| Gene Alias: | RAB18LI1|WARBM3 |
| Gene Description: | RAB18, member RAS oncogene family |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
