Difference between revisions of "TSS:Hg 104524.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000413405.5:0 ENST00000608994.5:0 ENST00000609413.5:0 ENST00000414457.5:0 | + | |all_trans=ENST00000413405.5:0 ENST00000608994.5:0 ENST00000609413.5:0 ENST00000414457.5:0 NR_003930:0 NR_110923:0 NR_110924:0 NR_110925:0 NR_110926:0 NR_110929:0 NR_110920:0 NR_110921:0 NR_110922:0 NR_110927:0 BC066966:0 BC050354:0 BC107795:0 AK056080:0 ENST00000427063.6:3 BC073888:3 BC031656:10 ENST00000446807.5:11 ENST00000423223.5:17 ENST00000445521.5:22 BC063483:22 ENST00000623175.3:28 AL832706:30 ENST00000438202.5:33 ENST00000646086.1:49 ENST00000430295.5:-126 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:51219 | |gene_source=HGNC:51219 | ||
|gene_symbol=SVIL-AS1 | |gene_symbol=SVIL-AS1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=RP11-534G20.3 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:51219 | |hgnc_mgi_id=HGNC:51219 | ||
|nearest_ensembl=ENSG00000224597 | |nearest_ensembl=ENSG00000224597 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_110920 |
|nearest_refseq=NR_003930 | |nearest_refseq=NR_003930 | ||
|nearest_unigene=Hs.499209 | |nearest_unigene=Hs.499209 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=29409527 | |start=29409527 | ||
|start_of_center_position=29409548 | |start_of_center_position=29409548 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000413405.5 ENST00000608994.5 ENST00000609413.5 ENST00000414457.5 NR_110929 NR_110927 | + | |transcript_name=ENST00000413405.5 ENST00000608994.5 ENST00000609413.5 ENST00000414457.5 NR_003930 NR_110923 NR_110924 NR_110925 NR_110926 NR_110929 NR_110920 NR_110921 NR_110922 NR_110927 BC066966 BC050354 BC107795 AK056080 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104524.1 | |tss_id=hg_104524.1 | ||
Revision as of 17:52, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 29409548 |
|---|---|
| End of the center position in the TSS region: | 29409549 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000413405.5 ENST00000608994.5 ENST00000609413.5 ENST00000414457.5 NR_003930 NR_110923 NR_110924 NR_110925 NR_110926 NR_110929 NR_110920 NR_110921 NR_110922 NR_110927 BC066966 BC050354 BC107795 AK056080 |
|---|---|
| Distance: | 0 |
| Num_trans: | 30 |
| All_trans: | ENST00000413405.5:0 ENST00000608994.5:0 ENST00000609413.5:0 ENST00000414457.5:0 NR_003930:0 NR_110923:0 NR_110924:0 NR_110925:0 NR_110926:0 NR_110929:0 NR_110920:0 NR_110921:0 NR_110922:0 NR_110927:0 BC066966:0 BC050354:0 BC107795:0 AK056080:0 ENST00000427063.6:3 BC073888:3 BC031656:10 ENST00000446807.5:11 ENST00000423223.5:17 ENST00000445521.5:22 BC063483:22 ENST00000623175.3:28 AL832706:30 ENST00000438202.5:33 ENST00000646086.1:49 ENST00000430295.5:-126 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NR_110920 |
| Entrez ID: | 102724316 |
| Nearest Unigene: | Hs.499209 |
| Nearest Refseq: | NR_003930 |
| Nearest Ensembl: | ENSG00000224597 |
| Gene Name: | SVIL antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | SVIL antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
