Difference between revisions of "TSS:Hg 104526.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000423223.5:0 ENST00000445521.5:0 ENST00000623175 | + | |all_trans=ENST00000423223.5:0 ENST00000445521.5:0 ENST00000623175.3:0 BC063483:0 AL832706:1 ENST00000446807.5:-2 BC031656:-3 ENST00000438202.5:4 ENST00000427063.6:-10 BC073888:-10 ENST00000646086.1:20 ENST00000414457.5:-24 ENST00000608994.5:-25 ENST00000609413.5:-25 AK056080:-25 BC107795:-28 BC050354:-35 ENST00000413405.5:-43 BC066966:-43 NR_003930:-48 NR_110923:-48 NR_110924:-48 NR_110925:-48 NR_110926:-48 NR_110929:-48 NR_110920:-48 NR_110921:-48 NR_110922:-48 NR_110927:-48 ENST00000430295.5:-180 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:51219 | |gene_source=HGNC:51219 | ||
|gene_symbol=SVIL-AS1 | |gene_symbol=SVIL-AS1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=RP11-534G20.3 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:51219 | |hgnc_mgi_id=HGNC:51219 | ||
|nearest_ensembl=ENSG00000224597 | |nearest_ensembl=ENSG00000224597 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_110920 |
|nearest_refseq=NR_003930 | |nearest_refseq=NR_003930 | ||
|nearest_unigene=Hs.499209 | |nearest_unigene=Hs.499209 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=29409581 | |start=29409581 | ||
|start_of_center_position=29409589 | |start_of_center_position=29409589 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000423223.5 ENST00000445521.5 ENST00000623175 | + | |transcript_name=ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 BC063483 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104526.1 | |tss_id=hg_104526.1 | ||
Revision as of 17:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 29409589 |
|---|---|
| End of the center position in the TSS region: | 29409590 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 BC063483 |
|---|---|
| Distance: | 0 |
| Num_trans: | 30 |
| All_trans: | ENST00000423223.5:0 ENST00000445521.5:0 ENST00000623175.3:0 BC063483:0 AL832706:1 ENST00000446807.5:-2 BC031656:-3 ENST00000438202.5:4 ENST00000427063.6:-10 BC073888:-10 ENST00000646086.1:20 ENST00000414457.5:-24 ENST00000608994.5:-25 ENST00000609413.5:-25 AK056080:-25 BC107795:-28 BC050354:-35 ENST00000413405.5:-43 BC066966:-43 NR_003930:-48 NR_110923:-48 NR_110924:-48 NR_110925:-48 NR_110926:-48 NR_110929:-48 NR_110920:-48 NR_110921:-48 NR_110922:-48 NR_110927:-48 ENST00000430295.5:-180 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NR_110920 |
| Entrez ID: | 102724316 |
| Nearest Unigene: | Hs.499209 |
| Nearest Refseq: | NR_003930 |
| Nearest Ensembl: | ENSG00000224597 |
| Gene Name: | SVIL antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | SVIL antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.085 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
