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Difference between revisions of "TSS:Hg 104602.1"

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Line 8: Line 8:
 
|ZFHEP=
 
|ZFHEP=
 
|ZFHX1A=
 
|ZFHX1A=
−
|all_trans=ENST00000560196.5:0 ENST00000542879.5:0 uc057soi.1:0 uc057soj.1:0 AK309331:0 AK294775:0 ENST00000561304.5:11 uc057sok.1:11 AK311372:11 ENST00000488625.6:-279 uc057soh.1:-279 BX647794:-279 ENST00000320985.14:299 uc001ivs.5:299 ENST00000361642.9:346 NM_001174093:346 NM_001174096:346 NM_001174095:346 NM_030751:346 uc001ivu.5:346 ENST00000559858.5:386 ENST00000560721.6:386 uc057sol.1:386 uc001ivv.5:386 AK307510:386 AK091478:386 AK299541:386 ENST00000558440.5:387 uc057som.1:387 AK310924:387 AK311137:387 AK314683:387 U12170:387 ENST00000424869.5:390 ENST00000437844.6:390 uc057son.1:390 uc057soo.1:390 AK308822:390 BC009572:390 AL831979:390 BC065705:392 BC112392:393 BC107781:394 ENST00000542815.7:396 uc010qeh.3:396 AK300830:396 D15050:406 AB384934:408 KJ904571:408 U19969:425
+
|all_trans=ENST00000560196.5:0 ENST00000542879.5:0 NM_001323641:0 NM_001323644:0 NM_001323646:0 NM_001323645:0 NM_001323642:0 AK309331:0 AK294775:0 ENST00000561304.5:11 AK311372:11 ENST00000488625.6:-279 BX647794:-279 ENST00000320985.14:299 ENST00000361642.9:346 NM_001323638:-357 NM_001323643:-357 ENST00000559858.5:386 ENST00000560721.6:386 AK307510:386 AK091478:386 AK299541:386 ENST00000558440.5:387 AK310924:387 AK311137:387 AK314683:387 U12170:387 ENST00000424869.6:390 ENST00000437844.6:390 NM_001323647:390 NM_001323674:390 NM_001323650:390 NM_001323648:390 NM_001174095:390 NM_001174093:390 NM_001323655:390 NM_001323654:390 NM_001323653:390 NM_001323652:390 NM_001323651:390 NM_001323649:390 NM_001174096:390 NM_030751:390 AK308822:390 BC009572:390 AL831979:390 BC065705:392 BC112392:393 BC107781:394 ENST00000542815.7:396 AK300830:396 D15050:406 AB384934:408 KJ904571:408 U19969:425
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.085
 
|cpg_percent=0.085
 
|distance=0
 
|distance=0
−
|distance_to_tss=17
+
|distance_to_tss=-18
 
|end=31318826
 
|end=31318826
 
|end_of_center_position=31318800
 
|end_of_center_position=31318800
 
|entrez_id=6935
 
|entrez_id=6935
 
|gc_percent=0.711443
 
|gc_percent=0.711443
−
|gene_alias=AREB6
+
|gene_alias=AREB6{{!}}BZP{{!}}DELTAEF1{{!}}FECD6{{!}}NIL2A{{!}}PPCD3{{!}}TCF8{{!}}ZFHEP{{!}}ZFHX1A
 
|gene_description=zinc finger E-box binding homeobox 1
 
|gene_description=zinc finger E-box binding homeobox 1
 
|gene_id=6935
 
|gene_id=6935
Line 27: Line 27:
 
|hgnc_mgi_id=HGNC:11642
 
|hgnc_mgi_id=HGNC:11642
 
|nearest_ensembl=ENSG00000148516
 
|nearest_ensembl=ENSG00000148516
−
|nearest_promoter_id=NM_001323645
+
|nearest_promoter_id=NM_001323646
 
|nearest_refseq=NM_030751
 
|nearest_refseq=NM_030751
 
|nearest_unigene=Hs.124503
 
|nearest_unigene=Hs.124503
−
|num_trans=50
+
|num_trans=55
 
|species=human
 
|species=human
 
|start=31318773
 
|start=31318773
 
|start_of_center_position=31318799
 
|start_of_center_position=31318799
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000560196.5 ENST00000542879.5 uc057soi.1 uc057soj.1 AK309331 AK294775
+
|transcript_name=ENST00000560196.5 ENST00000542879.5 NM_001323641 NM_001323644 NM_001323646 NM_001323645 NM_001323642 AK309331 AK294775
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_104602.1
 
|tss_id=hg_104602.1

Revision as of 17:54, 15 June 2021

Basic information about the TSS

TSS ID:hg_104602.1
Species:human
Chr:chr10
TSS Classification:yes
Start:31318773
End:31318826
Strand:+
TSS Score:1
Start of the center position in the TSS region:31318799
End of the center position in the TSS region:31318800



Gene and protein annotation

Transcript_name:ENST00000560196.5 ENST00000542879.5 NM_001323641 NM_001323644 NM_001323646 NM_001323645 NM_001323642 AK309331 AK294775
Distance:0
GeneID:6935
HGNC/MGI_ID:HGNC:11642
UniProt_ID:B4DGU2
Gene_name:zinc finger E-box binding homeobox 1
Gene_symbol:ZEB1
Gene_synonyms:AREB6 BZP FECD6 NIL-2-A ZEB Zfhep Zfhx1a
Gene_source:HGNC:11642



Transcript annotation

Transcript_name:ENST00000560196.5 ENST00000542879.5 NM_001323641 NM_001323644 NM_001323646 NM_001323645 NM_001323642 AK309331 AK294775
Distance:0
Num_trans:55
All_trans:ENST00000560196.5:0 ENST00000542879.5:0 NM_001323641:0 NM_001323644:0 NM_001323646:0 NM_001323645:0 NM_001323642:0 AK309331:0 AK294775:0 ENST00000561304.5:11 AK311372:11 ENST00000488625.6:-279 BX647794:-279 ENST00000320985.14:299 ENST00000361642.9:346 NM_001323638:-357 NM_001323643:-357 ENST00000559858.5:386 ENST00000560721.6:386 AK307510:386 AK091478:386 AK299541:386 ENST00000558440.5:387 AK310924:387 AK311137:387 AK314683:387 U12170:387 ENST00000424869.6:390 ENST00000437844.6:390 NM_001323647:390 NM_001323674:390 NM_001323650:390 NM_001323648:390 NM_001174095:390 NM_001174093:390 NM_001323655:390 NM_001323654:390 NM_001323653:390 NM_001323652:390 NM_001323651:390 NM_001323649:390 NM_001174096:390 NM_030751:390 AK308822:390 BC009572:390 AL831979:390 BC065705:392 BC112392:393 BC107781:394 ENST00000542815.7:396 AK300830:396 D15050:406 AB384934:408 KJ904571:408 U19969:425



TATA-Box annotation

Distance to TSS:-18
Nearest PromoterID:NM_001323646
Entrez ID:6935
Nearest Unigene:Hs.124503
Nearest Refseq:NM_030751
Nearest Ensembl:ENSG00000148516
Gene Name:zinc finger E-box binding homeobox 1
Gene Alias:AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A
Gene Description:zinc finger E-box binding homeobox 1
Gene Type:protein-coding
CpG%:0.085
GC%:0.711443
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_104602.1&oldid=1085380"