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Difference between revisions of "TSS:Hg 104604.1"

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Line 8: Line 8:
 
|ZFHEP=
 
|ZFHEP=
 
|ZFHX1A=
 
|ZFHX1A=
−
|all_trans=ENST00000559858.5:0 ENST00000560721.6:0 ENST00000558440.5:0 ENST00000424869.5:0 ENST00000437844.6:0 ENST00000542815.7:0 uc057sol.1:0 uc001ivv.5:0 uc057som.1:0 uc057son.1:0 uc057soo.1:0 uc010qeh.3:0 AK307510:0 AK091478:0 AK299541:0 AK310924:0 AK311137:0 AK314683:0 U12170:0 AK308822:0 BC009572:0 AL831979:0 BC065705:0 BC112392:0 BC107781:0 AK300830:0 D15050:5 AB384934:7 KJ904571:7 U19969:24 ENST00000361642.9:-27 NM_001174093:-27 NM_001174096:-27 NM_001174095:-27 NM_030751:-27 uc001ivu.5:-27 ENST00000320985.14:-74 uc001ivs.5:-74 ENST00000561304.5:-362 uc057sok.1:-362 AK311372:-362 ENST00000542879.5:-381 uc057soj.1:-381 AK294775:-381 ENST00000560196.5:-416 uc057soi.1:-416 AK309331:-416
+
|all_trans=ENST00000559858.5:0 ENST00000560721.6:0 ENST00000558440.5:0 ENST00000424869.6:0 ENST00000437844.6:0 ENST00000542815.7:0 NM_001323647:0 NM_001323674:0 NM_001323650:0 NM_001323648:0 NM_001174095:0 NM_001174093:0 NM_001323655:0 NM_001323654:0 NM_001323653:0 NM_001323652:0 NM_001323651:0 NM_001323649:0 NM_001174096:0 NM_030751:0 AK307510:0 AK091478:0 AK299541:0 AK310924:0 AK311137:0 AK314683:0 U12170:0 AK308822:0 BC009572:0 AL831979:0 BC065705:0 BC112392:0 BC107781:0 AK300830:0 D15050:5 AB384934:7 KJ904571:7 U19969:24 ENST00000361642.9:-27 ENST00000320985.14:-74 ENST00000561304.5:-362 AK311372:-362 ENST00000542879.5:-381 NM_001323641:-381 NM_001323644:-381 NM_001323646:-381 NM_001323645:-381 NM_001323642:-381 AK294775:-381 ENST00000560196.5:-416 AK309331:-416
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.075
 
|cpg_percent=0.075
 
|distance=0
 
|distance=0
−
|distance_to_tss=41
+
|distance_to_tss=-3
 
|end=31319227
 
|end=31319227
 
|end_of_center_position=31319213
 
|end_of_center_position=31319213
 
|entrez_id=6935
 
|entrez_id=6935
 
|gc_percent=0.676617
 
|gc_percent=0.676617
−
|gene_alias=AREB6
+
|gene_alias=AREB6{{!}}BZP{{!}}DELTAEF1{{!}}FECD6{{!}}NIL2A{{!}}PPCD3{{!}}TCF8{{!}}ZFHEP{{!}}ZFHX1A
 
|gene_description=zinc finger E-box binding homeobox 1
 
|gene_description=zinc finger E-box binding homeobox 1
 
|gene_id=6935
 
|gene_id=6935
Line 27: Line 27:
 
|hgnc_mgi_id=HGNC:11642
 
|hgnc_mgi_id=HGNC:11642
 
|nearest_ensembl=ENSG00000148516
 
|nearest_ensembl=ENSG00000148516
−
|nearest_promoter_id=NM_001323653
+
|nearest_promoter_id=NM_001174095
 
|nearest_refseq=NM_030751
 
|nearest_refseq=NM_030751
 
|nearest_unigene=Hs.124503
 
|nearest_unigene=Hs.124503
−
|num_trans=47
+
|num_trans=51
 
|species=human
 
|species=human
 
|start=31319198
 
|start=31319198
 
|start_of_center_position=31319212
 
|start_of_center_position=31319212
 
|strand=+
 
|strand=+
−
|tata_box="-3(GCATTTAGACAC,+,0.00)"
+
|tata_box=-3(GCATTTAGACAC,+,0.00)
−
|transcript_name=ENST00000559858.5 ENST00000560721.6 ENST00000558440.5 ENST00000424869.5 ENST00000437844.6 ENST00000542815.7 uc057sol.1 uc001ivv.5 uc057som.1 uc057son.1 uc057soo.1 uc010qeh.3 AK307510 AK091478 AK299541 AK310924 AK311137 AK314683 U12170 AK308822 BC009572 AL831979 BC065705 BC112392 BC107781 AK300830
+
|transcript_name=ENST00000559858.5 ENST00000560721.6 ENST00000558440.5 ENST00000424869.6 ENST00000437844.6 ENST00000542815.7 NM_001323647 NM_001323674 NM_001323650 NM_001323648 NM_001174095 NM_001174093 NM_001323655 NM_001323654 NM_001323653 NM_001323652 NM_001323651 NM_001323649 NM_001174096 NM_030751 AK307510 AK091478 AK299541 AK310924 AK311137 AK314683 U12170 AK308822 BC009572 AL831979 BC065705 BC112392 BC107781 AK300830
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_104604.1
 
|tss_id=hg_104604.1

Revision as of 17:54, 15 June 2021

Basic information about the TSS

TSS ID:hg_104604.1
Species:human
Chr:chr10
TSS Classification:yes
Start:31319198
End:31319227
Strand:+
TSS Score:1
Start of the center position in the TSS region:31319212
End of the center position in the TSS region:31319213



Gene and protein annotation

Transcript_name:ENST00000559858.5 ENST00000560721.6 ENST00000558440.5 ENST00000424869.6 ENST00000437844.6 ENST00000542815.7 NM_001323647 NM_001323674 NM_001323650 NM_001323648 NM_001174095 NM_001174093 NM_001323655 NM_001323654 NM_001323653 NM_001323652 NM_001323651 NM_001323649 NM_001174096 NM_030751 AK307510 AK091478 AK299541 AK310924 AK311137 AK314683 U12170 AK308822 BC009572 AL831979 BC065705 BC112392 BC107781 AK300830
Distance:0
GeneID:6935
HGNC/MGI_ID:HGNC:11642
UniProt_ID:A0JLS9 B2RBI8 B4DS26 F6TDF5 F6U0D0 H0YND9 P37275 Q32Q63
Gene_name:zinc finger E-box binding homeobox 1
Gene_symbol:ZEB1
Gene_synonyms:AREB6 BZP FECD6 NIL-2-A ZEB Zfhep Zfhx1a
Gene_source:HGNC:11642



Transcript annotation

Transcript_name:ENST00000559858.5 ENST00000560721.6 ENST00000558440.5 ENST00000424869.6 ENST00000437844.6 ENST00000542815.7 NM_001323647 NM_001323674 NM_001323650 NM_001323648 NM_001174095 NM_001174093 NM_001323655 NM_001323654 NM_001323653 NM_001323652 NM_001323651 NM_001323649 NM_001174096 NM_030751 AK307510 AK091478 AK299541 AK310924 AK311137 AK314683 U12170 AK308822 BC009572 AL831979 BC065705 BC112392 BC107781 AK300830
Distance:0
Num_trans:51
All_trans:ENST00000559858.5:0 ENST00000560721.6:0 ENST00000558440.5:0 ENST00000424869.6:0 ENST00000437844.6:0 ENST00000542815.7:0 NM_001323647:0 NM_001323674:0 NM_001323650:0 NM_001323648:0 NM_001174095:0 NM_001174093:0 NM_001323655:0 NM_001323654:0 NM_001323653:0 NM_001323652:0 NM_001323651:0 NM_001323649:0 NM_001174096:0 NM_030751:0 AK307510:0 AK091478:0 AK299541:0 AK310924:0 AK311137:0 AK314683:0 U12170:0 AK308822:0 BC009572:0 AL831979:0 BC065705:0 BC112392:0 BC107781:0 AK300830:0 D15050:5 AB384934:7 KJ904571:7 U19969:24 ENST00000361642.9:-27 ENST00000320985.14:-74 ENST00000561304.5:-362 AK311372:-362 ENST00000542879.5:-381 NM_001323641:-381 NM_001323644:-381 NM_001323646:-381 NM_001323645:-381 NM_001323642:-381 AK294775:-381 ENST00000560196.5:-416 AK309331:-416



TATA-Box annotation

Distance to TSS:-3
Nearest PromoterID:NM_001174095
Entrez ID:6935
Nearest Unigene:Hs.124503
Nearest Refseq:NM_030751
Nearest Ensembl:ENSG00000148516
Gene Name:zinc finger E-box binding homeobox 1
Gene Alias:AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A
Gene Description:zinc finger E-box binding homeobox 1
Gene Type:protein-coding
CpG%:0.075
GC%:0.676617
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-3(GCATTTAGACAC,+,0.00)
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_104604.1&oldid=1085382"