Difference between revisions of "TSS:Hg 104627.1"
From referenceTSS
| Line 4: | Line 4: | ||
|BioT2-C= | |BioT2-C= | ||
|C10orf68= | |C10orf68= | ||
| − | |all_trans=ENST00000476558. | + | |all_trans=ENST00000476558.7:0 ENST00000277657.12:0 ENST00000362006.11:0 NM_001026383:0 NM_145023:0 NM_001321115:0 NR_109827:0 NR_109826:0 AK057324:0 BC042672:0 BC022020:0 GQ891461:0 ENST00000545067.6:205 BX647771:205 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=32446182 | |end=32446182 | ||
|end_of_center_position=32446143 | |end_of_center_position=32446143 | ||
|entrez_id=79741 | |entrez_id=79741 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=BIOT2 | + | |gene_alias=BIOT2{{!}}BioT2-A{{!}}BioT2-B{{!}}BioT2-C{{!}}C10orf68 |
|gene_description=coiled-coil domain containing 7 | |gene_description=coiled-coil domain containing 7 | ||
|gene_id=79741 | |gene_id=79741 | ||
| Line 22: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26533 | |hgnc_mgi_id=HGNC:26533 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000216937 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001321115 |
|nearest_refseq=NM_024688 | |nearest_refseq=NM_024688 | ||
|nearest_unigene=Hs.585464 | |nearest_unigene=Hs.585464 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=32446102 | |start=32446102 | ||
|start_of_center_position=32446142 | |start_of_center_position=32446142 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000476558. | + | |transcript_name=ENST00000476558.7 ENST00000277657.12 ENST00000362006.11 NM_001026383 NM_145023 NM_001321115 NR_109827 NR_109826 AK057324 BC042672 BC022020 GQ891461 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104627.1 | |tss_id=hg_104627.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q96M83 | + | |uniprot_id=A0A384NKY2 Q96M83 |
}} | }} | ||
Revision as of 17:55, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32446142 |
|---|---|
| End of the center position in the TSS region: | 32446143 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000476558.7 ENST00000277657.12 ENST00000362006.11 NM_001026383 NM_145023 NM_001321115 NR_109827 NR_109826 AK057324 BC042672 BC022020 GQ891461 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000476558.7:0 ENST00000277657.12:0 ENST00000362006.11:0 NM_001026383:0 NM_145023:0 NM_001321115:0 NR_109827:0 NR_109826:0 AK057324:0 BC042672:0 BC022020:0 GQ891461:0 ENST00000545067.6:205 BX647771:205 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001321115 |
| Entrez ID: | 79741 |
| Nearest Unigene: | Hs.585464 |
| Nearest Refseq: | NM_024688 |
| Nearest Ensembl: | ENSG00000216937 |
| Gene Name: | coiled-coil domain containing 7 |
| Gene Alias: | BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 |
| Gene Description: | coiled-coil domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
